miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 3' -54.6 NC_005264.1 + 7864 0.66 0.950279
Target:  5'- uGCGAggcccccacguucgcUGCGCAucuGCGCGCGUAcGaCGUc -3'
miRNA:   3'- -CGCU---------------GCGCGUuu-CGCGCGUAU-C-GCAu -5'
24442 3' -54.6 NC_005264.1 + 36295 0.66 0.948575
Target:  5'- cGCGGCGCGaAGAGCcCGUAgacgaGGCGa- -3'
miRNA:   3'- -CGCUGCGCgUUUCGcGCGUa----UCGCau -5'
24442 3' -54.6 NC_005264.1 + 59949 0.66 0.948575
Target:  5'- aGCGuCGCGUugacaguGGCGUcCAUGGCGa- -3'
miRNA:   3'- -CGCuGCGCGuu-----UCGCGcGUAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 137287 0.66 0.948575
Target:  5'- cGCGGCGUugGC--GGCGaCGCG-GGCGUAc -3'
miRNA:   3'- -CGCUGCG--CGuuUCGC-GCGUaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 114266 0.66 0.948575
Target:  5'- --cAC-CGCGAAGCGCGuCGUGGCa-- -3'
miRNA:   3'- cgcUGcGCGUUUCGCGC-GUAUCGcau -5'
24442 3' -54.6 NC_005264.1 + 120109 0.66 0.948575
Target:  5'- gGUGcCGCGCAGaaguGGgGCGCAgcgAGCa-- -3'
miRNA:   3'- -CGCuGCGCGUU----UCgCGCGUa--UCGcau -5'
24442 3' -54.6 NC_005264.1 + 56925 0.66 0.948575
Target:  5'- gGCGuACGUGCGuGGCGCaCGgGGCGa- -3'
miRNA:   3'- -CGC-UGCGCGUuUCGCGcGUaUCGCau -5'
24442 3' -54.6 NC_005264.1 + 46466 0.66 0.948575
Target:  5'- cGCGGCGCucuuugccuGUGGAGuCGCGgGUuGCGUGa -3'
miRNA:   3'- -CGCUGCG---------CGUUUC-GCGCgUAuCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 109887 0.66 0.948575
Target:  5'- cCGcCGCGUAGAgGCGCuGCAUcGGCGa- -3'
miRNA:   3'- cGCuGCGCGUUU-CGCG-CGUA-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 87641 0.66 0.948575
Target:  5'- uGCaGcCGCGUggGGCGCGgGaccUGGCGg- -3'
miRNA:   3'- -CG-CuGCGCGuuUCGCGCgU---AUCGCau -5'
24442 3' -54.6 NC_005264.1 + 16550 0.66 0.948143
Target:  5'- cGCGuauuucaGCGCGguGGGCGgCGCcggGGCGg- -3'
miRNA:   3'- -CGC-------UGCGCguUUCGC-GCGua-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 54420 0.66 0.944148
Target:  5'- cGCGGCGCGCcGAcuaGgGCGUGGgGUu -3'
miRNA:   3'- -CGCUGCGCGuUUcg-CgCGUAUCgCAu -5'
24442 3' -54.6 NC_005264.1 + 98101 0.66 0.944148
Target:  5'- gGCGAuccuUGCGCGGGGCacgGCGCcgAGCc-- -3'
miRNA:   3'- -CGCU----GCGCGUUUCG---CGCGuaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 99413 0.66 0.944148
Target:  5'- cUGGCaCGCAAAGCGC-CAUcgGGCGg- -3'
miRNA:   3'- cGCUGcGCGUUUCGCGcGUA--UCGCau -5'
24442 3' -54.6 NC_005264.1 + 148493 0.66 0.944148
Target:  5'- uGgGACGCGCu-GGuCGCGU-UGGCGg- -3'
miRNA:   3'- -CgCUGCGCGuuUC-GCGCGuAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 62686 0.66 0.944148
Target:  5'- gGCGucaGCGCGAAgaacGCGUGCuaccuGCGUAu -3'
miRNA:   3'- -CGCug-CGCGUUU----CGCGCGuau--CGCAU- -5'
24442 3' -54.6 NC_005264.1 + 142768 0.66 0.942773
Target:  5'- aGCuGACGgugcuugcucgcuaCGCGGGGC-CGCGUGGCGa- -3'
miRNA:   3'- -CG-CUGC--------------GCGUUUCGcGCGUAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 30119 0.66 0.93948
Target:  5'- gGCGGCGCgGCAccGAGCugcgGCGCAUuGGCc-- -3'
miRNA:   3'- -CGCUGCG-CGU--UUCG----CGCGUA-UCGcau -5'
24442 3' -54.6 NC_005264.1 + 78426 0.66 0.93948
Target:  5'- aGCcuACGCGUucGucGCGUGguUAGCGUAc -3'
miRNA:   3'- -CGc-UGCGCG--UuuCGCGCguAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 92115 0.66 0.93948
Target:  5'- uGCGGCG-GCAcacAGCGCaGCGUucGGCGa- -3'
miRNA:   3'- -CGCUGCgCGUu--UCGCG-CGUA--UCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.