miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 3' -54.6 NC_005264.1 + 92115 0.66 0.93948
Target:  5'- uGCGGCG-GCAcacAGCGCaGCGUucGGCGa- -3'
miRNA:   3'- -CGCUGCgCGUu--UCGCG-CGUA--UCGCau -5'
24442 3' -54.6 NC_005264.1 + 22143 0.66 0.934567
Target:  5'- cGCGACGCGCGccuuagauuGCGCcGCG-GGcCGUAc -3'
miRNA:   3'- -CGCUGCGCGUuu-------CGCG-CGUaUC-GCAU- -5'
24442 3' -54.6 NC_005264.1 + 113383 0.66 0.934567
Target:  5'- cGCGGCGagu-GAGCGCGCAcauucUAGCa-- -3'
miRNA:   3'- -CGCUGCgcguUUCGCGCGU-----AUCGcau -5'
24442 3' -54.6 NC_005264.1 + 20467 0.66 0.934567
Target:  5'- aGCGGCGCGCAuGGgaGgGCAUGGa--- -3'
miRNA:   3'- -CGCUGCGCGUuUCg-CgCGUAUCgcau -5'
24442 3' -54.6 NC_005264.1 + 62686 0.66 0.944148
Target:  5'- gGCGucaGCGCGAAgaacGCGUGCuaccuGCGUAu -3'
miRNA:   3'- -CGCug-CGCGUUU----CGCGCGuau--CGCAU- -5'
24442 3' -54.6 NC_005264.1 + 3693 0.66 0.934567
Target:  5'- cUGGCGCGgAAAGgGCGCAcAGUa-- -3'
miRNA:   3'- cGCUGCGCgUUUCgCGCGUaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 103069 0.66 0.93948
Target:  5'- gGCGACGaguccCGCGAAGCGUccGCGUcGCa-- -3'
miRNA:   3'- -CGCUGC-----GCGUUUCGCG--CGUAuCGcau -5'
24442 3' -54.6 NC_005264.1 + 81443 0.66 0.934567
Target:  5'- aGCGGCGCGCAcccGCaUGCAUcucGGCaGUAa -3'
miRNA:   3'- -CGCUGCGCGUuu-CGcGCGUA---UCG-CAU- -5'
24442 3' -54.6 NC_005264.1 + 30119 0.66 0.93948
Target:  5'- gGCGGCGCgGCAccGAGCugcgGCGCAUuGGCc-- -3'
miRNA:   3'- -CGCUGCG-CGU--UUCG----CGCGUA-UCGcau -5'
24442 3' -54.6 NC_005264.1 + 16550 0.66 0.948143
Target:  5'- cGCGuauuucaGCGCGguGGGCGgCGCcggGGCGg- -3'
miRNA:   3'- -CGC-------UGCGCguUUCGC-GCGua-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 109266 0.66 0.929409
Target:  5'- cGCcACGCGUcgGGCGCGuCGUAccGCGa- -3'
miRNA:   3'- -CGcUGCGCGuuUCGCGC-GUAU--CGCau -5'
24442 3' -54.6 NC_005264.1 + 124319 0.66 0.934062
Target:  5'- gGCGGCGgcugaccCGUggGGCGgGCGacUGGCGg- -3'
miRNA:   3'- -CGCUGC-------GCGuuUCGCgCGU--AUCGCau -5'
24442 3' -54.6 NC_005264.1 + 148493 0.66 0.944148
Target:  5'- uGgGACGCGCu-GGuCGCGU-UGGCGg- -3'
miRNA:   3'- -CgCUGCGCGuuUC-GCGCGuAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 52105 0.66 0.934567
Target:  5'- gGCGACGUcaGaCAuAGCGCGUGaguGCGUGu -3'
miRNA:   3'- -CGCUGCG--C-GUuUCGCGCGUau-CGCAU- -5'
24442 3' -54.6 NC_005264.1 + 54420 0.66 0.944148
Target:  5'- cGCGGCGCGCcGAcuaGgGCGUGGgGUu -3'
miRNA:   3'- -CGCUGCGCGuUUcg-CgCGUAUCgCAu -5'
24442 3' -54.6 NC_005264.1 + 116060 0.66 0.934567
Target:  5'- uGCGGgGCGCAGuaaCGCGCccaAGCGa- -3'
miRNA:   3'- -CGCUgCGCGUUuc-GCGCGua-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 78426 0.66 0.93948
Target:  5'- aGCcuACGCGUucGucGCGUGguUAGCGUAc -3'
miRNA:   3'- -CGc-UGCGCG--UuuCGCGCguAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 149423 0.66 0.93948
Target:  5'- gGCGGCG-GCGGucGCGCGCcgGuGCGg- -3'
miRNA:   3'- -CGCUGCgCGUUu-CGCGCGuaU-CGCau -5'
24442 3' -54.6 NC_005264.1 + 150736 0.66 0.93948
Target:  5'- gGUcGCGCGCGGGGCGUacuuguucGCGUcGUGUAa -3'
miRNA:   3'- -CGcUGCGCGUUUCGCG--------CGUAuCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 87527 0.66 0.929409
Target:  5'- cUGGCGCGCGGcAGaUGCuGCAgcgugGGCGUAg -3'
miRNA:   3'- cGCUGCGCGUU-UC-GCG-CGUa----UCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.