miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 3' -54.6 NC_005264.1 + 84289 1.09 0.003586
Target:  5'- aGCGACGCGCAAAGCGCGCAUAGCGUAa -3'
miRNA:   3'- -CGCUGCGCGUUUCGCGCGUAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 142024 0.81 0.248132
Target:  5'- cCGucCGCGCGAuuGGCGUGCAUGGCGUGc -3'
miRNA:   3'- cGCu-GCGCGUU--UCGCGCGUAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 154916 0.79 0.329776
Target:  5'- aCGACGCGUGGAcGCGCGCGUugcuagccagAGCGUGg -3'
miRNA:   3'- cGCUGCGCGUUU-CGCGCGUA----------UCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 29262 0.78 0.361071
Target:  5'- uGCGGCGCGCAGAuuguuggacuGUGCGCGggcGCGUGc -3'
miRNA:   3'- -CGCUGCGCGUUU----------CGCGCGUau-CGCAU- -5'
24442 3' -54.6 NC_005264.1 + 131607 0.76 0.457207
Target:  5'- aGCGGCGCGCGuGGGCGCGC---GCGg- -3'
miRNA:   3'- -CGCUGCGCGU-UUCGCGCGuauCGCau -5'
24442 3' -54.6 NC_005264.1 + 130528 0.76 0.466617
Target:  5'- gGCGAgauagaccUGCGCGAAGCGuCGCGgcGCGUGu -3'
miRNA:   3'- -CGCU--------GCGCGUUUCGC-GCGUauCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 103145 0.75 0.495428
Target:  5'- cGCGGCGCGCG----GCGCAaAGCGUAa -3'
miRNA:   3'- -CGCUGCGCGUuucgCGCGUaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 156693 0.75 0.495428
Target:  5'- cGCGAUGCGCGAcgGGCGCGC--GGCc-- -3'
miRNA:   3'- -CGCUGCGCGUU--UCGCGCGuaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 70581 0.75 0.495428
Target:  5'- aCGugGCGaAGAGCGCGCuUGGCGa- -3'
miRNA:   3'- cGCugCGCgUUUCGCGCGuAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 37667 0.75 0.495428
Target:  5'- cGCGAUGCGCGAcgGGCGCGC--GGCc-- -3'
miRNA:   3'- -CGCUGCGCGUU--UCGCGCGuaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 28042 0.74 0.554239
Target:  5'- cCGGCGCGCGcgacgccggguaaAAGCGCGCGgaAGCGa- -3'
miRNA:   3'- cGCUGCGCGU-------------UUCGCGCGUa-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 119498 0.74 0.555256
Target:  5'- uGUGGCuGCGCAGGGCGUGCuccgaGGCGg- -3'
miRNA:   3'- -CGCUG-CGCGUUUCGCGCGua---UCGCau -5'
24442 3' -54.6 NC_005264.1 + 30619 0.74 0.565452
Target:  5'- gGCGGCgGCGaCGGAuccGCGCGCAgcGCGUAg -3'
miRNA:   3'- -CGCUG-CGC-GUUU---CGCGCGUauCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 149646 0.74 0.565452
Target:  5'- gGCGGCgGCGaCGGAuccGCGCGCAgcGCGUAg -3'
miRNA:   3'- -CGCUG-CGC-GUUU---CGCGCGUauCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 36494 0.73 0.585981
Target:  5'- gGCGuuuuCGUGCGAAGCGCGCGgccucgacgaGGCGg- -3'
miRNA:   3'- -CGCu---GCGCGUUUCGCGCGUa---------UCGCau -5'
24442 3' -54.6 NC_005264.1 + 117843 0.73 0.606647
Target:  5'- -aGGCGCgGCGGAGUGCGCAUgcaaggcauGGCGg- -3'
miRNA:   3'- cgCUGCG-CGUUUCGCGCGUA---------UCGCau -5'
24442 3' -54.6 NC_005264.1 + 96897 0.73 0.606647
Target:  5'- gGCGGCGCGCGAGG-GCGC--GGCa-- -3'
miRNA:   3'- -CGCUGCGCGUUUCgCGCGuaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 154511 0.73 0.627391
Target:  5'- uGCGGgGCGCAcaugccGCGCGCAaacaAGCGUGc -3'
miRNA:   3'- -CGCUgCGCGUuu----CGCGCGUa---UCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 6817 0.72 0.64815
Target:  5'- gGCGuccacCGCGC-AAGCGuCGCcgGGCGUAc -3'
miRNA:   3'- -CGCu----GCGCGuUUCGC-GCGuaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 57487 0.72 0.657478
Target:  5'- gGCGGCG-GCGAagaugcuGGCGCGCGcGGCGg- -3'
miRNA:   3'- -CGCUGCgCGUU-------UCGCGCGUaUCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.