miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 3' -54.6 NC_005264.1 + 154 0.71 0.749709
Target:  5'- cCGGCGCGC--AGCGCGCcgAcCGUAc -3'
miRNA:   3'- cGCUGCGCGuuUCGCGCGuaUcGCAU- -5'
24442 3' -54.6 NC_005264.1 + 2501 0.67 0.906321
Target:  5'- gGCGGgccuCGCGCGAcuucAGCGCGgGgGGCGa- -3'
miRNA:   3'- -CGCU----GCGCGUU----UCGCGCgUaUCGCau -5'
24442 3' -54.6 NC_005264.1 + 3693 0.66 0.934567
Target:  5'- cUGGCGCGgAAAGgGCGCAcAGUa-- -3'
miRNA:   3'- cGCUGCGCgUUUCgCGCGUaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 5292 0.66 0.934062
Target:  5'- gGCGGCGgcugaccCGUggGGCGgGCGacUGGCGg- -3'
miRNA:   3'- -CGCUGC-------GCGuuUCGCgCGU--AUCGCau -5'
24442 3' -54.6 NC_005264.1 + 6140 0.68 0.856787
Target:  5'- gGCGAgggcCGCGCGcccGuCGCGCAUcGCGUGc -3'
miRNA:   3'- -CGCU----GCGCGUuu-C-GCGCGUAuCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 6313 0.71 0.749709
Target:  5'- uGCG-CG-GCGAGGCuuCGCGUGGCGUAc -3'
miRNA:   3'- -CGCuGCgCGUUUCGc-GCGUAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 6669 0.71 0.699662
Target:  5'- cGCcACGcCGCAAAGcCGCGCAUAuGCGc- -3'
miRNA:   3'- -CGcUGC-GCGUUUC-GCGCGUAU-CGCau -5'
24442 3' -54.6 NC_005264.1 + 6817 0.72 0.64815
Target:  5'- gGCGuccacCGCGC-AAGCGuCGCcgGGCGUAc -3'
miRNA:   3'- -CGCu----GCGCGuUUCGC-GCGuaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 6892 0.71 0.709826
Target:  5'- cGCGAgcCGCGCAGucccAGCGCGCGgcuuuccgugGGCGc- -3'
miRNA:   3'- -CGCU--GCGCGUU----UCGCGCGUa---------UCGCau -5'
24442 3' -54.6 NC_005264.1 + 7864 0.66 0.950279
Target:  5'- uGCGAggcccccacguucgcUGCGCAucuGCGCGCGUAcGaCGUc -3'
miRNA:   3'- -CGCU---------------GCGCGUuu-CGCGCGUAU-C-GCAu -5'
24442 3' -54.6 NC_005264.1 + 10318 0.7 0.778539
Target:  5'- aGCGACGCGCAcuGAGCaaGCGCGgaaCGa- -3'
miRNA:   3'- -CGCUGCGCGU--UUCG--CGCGUaucGCau -5'
24442 3' -54.6 NC_005264.1 + 15466 0.68 0.885769
Target:  5'- cGCGACGaCGCGAaagcggcgaucgcGGCGgGCAUGGg--- -3'
miRNA:   3'- -CGCUGC-GCGUU-------------UCGCgCGUAUCgcau -5'
24442 3' -54.6 NC_005264.1 + 15916 0.69 0.848829
Target:  5'- aGgGACGUGUAGGuGUGCGCGUgaguuucgAGCGUc -3'
miRNA:   3'- -CgCUGCGCGUUU-CGCGCGUA--------UCGCAu -5'
24442 3' -54.6 NC_005264.1 + 16550 0.66 0.948143
Target:  5'- cGCGuauuucaGCGCGguGGGCGgCGCcggGGCGg- -3'
miRNA:   3'- -CGC-------UGCGCguUUCGC-GCGua-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 18057 0.71 0.729942
Target:  5'- gGCGGCGcCGCGAgccagGGCGCGCG-GGCa-- -3'
miRNA:   3'- -CGCUGC-GCGUU-----UCGCGCGUaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 18890 0.68 0.872069
Target:  5'- cGCGGCuuGUGaCGAGauuuuuGCGCGCAUGGUGUc -3'
miRNA:   3'- -CGCUG--CGC-GUUU------CGCGCGUAUCGCAu -5'
24442 3' -54.6 NC_005264.1 + 19065 0.67 0.906321
Target:  5'- cGCGggaaGCGCGCuuccCGCGCAUAGgGa- -3'
miRNA:   3'- -CGC----UGCGCGuuucGCGCGUAUCgCau -5'
24442 3' -54.6 NC_005264.1 + 19383 0.67 0.906321
Target:  5'- aGCG-UGCGUuuGGgGCGCAUuGGCGa- -3'
miRNA:   3'- -CGCuGCGCGuuUCgCGCGUA-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 19433 0.69 0.840668
Target:  5'- gGUGugGcCGCGGGGCGCGgGUGG-GUu -3'
miRNA:   3'- -CGCugC-GCGUUUCGCGCgUAUCgCAu -5'
24442 3' -54.6 NC_005264.1 + 20467 0.66 0.934567
Target:  5'- aGCGGCGCGCAuGGgaGgGCAUGGa--- -3'
miRNA:   3'- -CGCUGCGCGUuUCg-CgCGUAUCgcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.