miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 3' -54.6 NC_005264.1 + 6313 0.71 0.749709
Target:  5'- uGCG-CG-GCGAGGCuuCGCGUGGCGUAc -3'
miRNA:   3'- -CGCuGCgCGUUUCGc-GCGUAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 154791 0.72 0.679167
Target:  5'- cGCGACGUgggugaagagGCGGAGgGCGCgGUGGCGc- -3'
miRNA:   3'- -CGCUGCG----------CGUUUCgCGCG-UAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 162823 0.72 0.679167
Target:  5'- uGCGGgGCGCAGuuucuGuCGCGaUAUAGCGUGg -3'
miRNA:   3'- -CGCUgCGCGUUu----C-GCGC-GUAUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 6669 0.71 0.699662
Target:  5'- cGCcACGcCGCAAAGcCGCGCAUAuGCGc- -3'
miRNA:   3'- -CGcUGC-GCGUUUC-GCGCGUAU-CGCau -5'
24442 3' -54.6 NC_005264.1 + 6892 0.71 0.709826
Target:  5'- cGCGAgcCGCGCAGucccAGCGCGCGgcuuuccgugGGCGc- -3'
miRNA:   3'- -CGCU--GCGCGUU----UCGCGCGUa---------UCGCau -5'
24442 3' -54.6 NC_005264.1 + 69591 0.71 0.709826
Target:  5'- cGCGaACGCGCcgacgAGGGCGCcGCccGGCGUGa -3'
miRNA:   3'- -CGC-UGCGCG-----UUUCGCG-CGuaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 18057 0.71 0.729942
Target:  5'- gGCGGCGcCGCGAgccagGGCGCGCG-GGCa-- -3'
miRNA:   3'- -CGCUGC-GCGUU-----UCGCGCGUaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 45763 0.71 0.739874
Target:  5'- -gGACcccuGCGCGGGGCGCGCGgAGUGg- -3'
miRNA:   3'- cgCUG----CGCGUUUCGCGCGUaUCGCau -5'
24442 3' -54.6 NC_005264.1 + 61245 0.71 0.739874
Target:  5'- aUGGCGCGCuccagcucacGGCGCGCcucGGCGUAc -3'
miRNA:   3'- cGCUGCGCGuu--------UCGCGCGua-UCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 53568 0.72 0.679167
Target:  5'- uUGuCGCGCAGAGCgGCGCGgcuuGCGUu -3'
miRNA:   3'- cGCuGCGCGUUUCG-CGCGUau--CGCAu -5'
24442 3' -54.6 NC_005264.1 + 117432 0.72 0.668856
Target:  5'- cGCGGCGCGCAGGGCGcCGCccuccauCGUu -3'
miRNA:   3'- -CGCUGCGCGUUUCGC-GCGuauc---GCAu -5'
24442 3' -54.6 NC_005264.1 + 162691 0.72 0.658514
Target:  5'- uCGGCGCGCu--GCGCGCc-GGCGUu -3'
miRNA:   3'- cGCUGCGCGuuuCGCGCGuaUCGCAu -5'
24442 3' -54.6 NC_005264.1 + 70581 0.75 0.495428
Target:  5'- aCGugGCGaAGAGCGCGCuUGGCGa- -3'
miRNA:   3'- cGCugCGCgUUUCGCGCGuAUCGCau -5'
24442 3' -54.6 NC_005264.1 + 156693 0.75 0.495428
Target:  5'- cGCGAUGCGCGAcgGGCGCGC--GGCc-- -3'
miRNA:   3'- -CGCUGCGCGUU--UCGCGCGuaUCGcau -5'
24442 3' -54.6 NC_005264.1 + 28042 0.74 0.554239
Target:  5'- cCGGCGCGCGcgacgccggguaaAAGCGCGCGgaAGCGa- -3'
miRNA:   3'- cGCUGCGCGU-------------UUCGCGCGUa-UCGCau -5'
24442 3' -54.6 NC_005264.1 + 149646 0.74 0.565452
Target:  5'- gGCGGCgGCGaCGGAuccGCGCGCAgcGCGUAg -3'
miRNA:   3'- -CGCUG-CGC-GUUU---CGCGCGUauCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 36494 0.73 0.585981
Target:  5'- gGCGuuuuCGUGCGAAGCGCGCGgccucgacgaGGCGg- -3'
miRNA:   3'- -CGCu---GCGCGUUUCGCGCGUa---------UCGCau -5'
24442 3' -54.6 NC_005264.1 + 6817 0.72 0.64815
Target:  5'- gGCGuccacCGCGC-AAGCGuCGCcgGGCGUAc -3'
miRNA:   3'- -CGCu----GCGCGuUUCGC-GCGuaUCGCAU- -5'
24442 3' -54.6 NC_005264.1 + 57487 0.72 0.657478
Target:  5'- gGCGGCG-GCGAagaugcuGGCGCGCGcGGCGg- -3'
miRNA:   3'- -CGCUGCgCGUU-------UCGCGCGUaUCGCau -5'
24442 3' -54.6 NC_005264.1 + 79321 0.72 0.658514
Target:  5'- cGCu-CGcCGCAuuuGCGUGCGUAGCGUGc -3'
miRNA:   3'- -CGcuGC-GCGUuu-CGCGCGUAUCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.