miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 5' -62.3 NC_005264.1 + 110148 0.66 0.670784
Target:  5'- gGCgGGCGGCGaa-ACCCGcCGCGGc- -3'
miRNA:   3'- -CGgUCGCCGCgcaUGGGUcGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 439 0.66 0.670784
Target:  5'- uGCCcuAGCGuCuCGUACCUAuGCGCGGUc -3'
miRNA:   3'- -CGG--UCGCcGcGCAUGGGU-CGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 21902 0.66 0.670784
Target:  5'- uUCGGCGGCGCGUGCggucgUAGUGCuGUc -3'
miRNA:   3'- cGGUCGCCGCGCAUGg----GUCGCGcCAc -5'
24442 5' -62.3 NC_005264.1 + 119466 0.66 0.670784
Target:  5'- uGCCcuAGCGuCuCGUACCUAuGCGCGGUc -3'
miRNA:   3'- -CGG--UCGCcGcGCAUGGGU-CGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 110899 0.66 0.670784
Target:  5'- cGUUAGCGGCacccucGCcaaGCUCGGCGCGGa- -3'
miRNA:   3'- -CGGUCGCCG------CGca-UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 135171 0.66 0.669813
Target:  5'- gGCCAGC--CGCGUACCUcgguccgAGCGcCGcGUGg -3'
miRNA:   3'- -CGGUCGccGCGCAUGGG-------UCGC-GC-CAC- -5'
24442 5' -62.3 NC_005264.1 + 101305 0.66 0.669813
Target:  5'- uGCCAGCuaugcccaGCGCGauaaucaUGCCCAGgUGCGGc- -3'
miRNA:   3'- -CGGUCGc-------CGCGC-------AUGGGUC-GCGCCac -5'
24442 5' -62.3 NC_005264.1 + 70472 0.66 0.661059
Target:  5'- cGCCAGUguGGgGUaGUGCCCAGgGgGGc- -3'
miRNA:   3'- -CGGUCG--CCgCG-CAUGGGUCgCgCCac -5'
24442 5' -62.3 NC_005264.1 + 42065 0.66 0.661059
Target:  5'- uGCCcGCGGCGCGUgGCgUCAGCuGCGc-- -3'
miRNA:   3'- -CGGuCGCCGCGCA-UG-GGUCG-CGCcac -5'
24442 5' -62.3 NC_005264.1 + 20258 0.66 0.661059
Target:  5'- gGCCGGCauucaggggacGGUGCGagaagauacUugUCuGCGCGGUGu -3'
miRNA:   3'- -CGGUCG-----------CCGCGC---------AugGGuCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 30855 0.66 0.651313
Target:  5'- cGgCGGCGGCGCGccGCCCGGUagGCa--- -3'
miRNA:   3'- -CgGUCGCCGCGCa-UGGGUCG--CGccac -5'
24442 5' -62.3 NC_005264.1 + 52970 0.66 0.651313
Target:  5'- -gCGGCGGUgcuGCGaACUCAG-GCGGUGc -3'
miRNA:   3'- cgGUCGCCG---CGCaUGGGUCgCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 57876 0.66 0.651313
Target:  5'- -aCGGCGGCaCGgcgGCCaUGGCGCGGaUGa -3'
miRNA:   3'- cgGUCGCCGcGCa--UGG-GUCGCGCC-AC- -5'
24442 5' -62.3 NC_005264.1 + 149881 0.66 0.651313
Target:  5'- cGgCGGCGGCGCGccGCCCGGUagGCa--- -3'
miRNA:   3'- -CgGUCGCCGCGCa-UGGGUCG--CGccac -5'
24442 5' -62.3 NC_005264.1 + 59824 0.66 0.651313
Target:  5'- cGUgAG-GGuCGCGUACgCCAGCGCGcaauacGUGg -3'
miRNA:   3'- -CGgUCgCC-GCGCAUG-GGUCGCGC------CAC- -5'
24442 5' -62.3 NC_005264.1 + 75742 0.66 0.650337
Target:  5'- gGCCAGUcugGGUGCGuUACCCGcgaggcuGUGUGGcUGg -3'
miRNA:   3'- -CGGUCG---CCGCGC-AUGGGU-------CGCGCC-AC- -5'
24442 5' -62.3 NC_005264.1 + 100996 0.66 0.650337
Target:  5'- cGCCAacaacccguacGCGGCGCaGgcgagccaggcacUGCCCGGCGaugcccgcggccCGGUGg -3'
miRNA:   3'- -CGGU-----------CGCCGCG-C-------------AUGGGUCGC------------GCCAC- -5'
24442 5' -62.3 NC_005264.1 + 125652 0.66 0.648386
Target:  5'- --gAGCGGCGcCGUaaaaugcgucugcgGCCCAGCGUGcUGc -3'
miRNA:   3'- cggUCGCCGC-GCA--------------UGGGUCGCGCcAC- -5'
24442 5' -62.3 NC_005264.1 + 78517 0.66 0.641552
Target:  5'- gGCCAGUaaccaucGCGcCGUGCCCGGUGCa--- -3'
miRNA:   3'- -CGGUCGc------CGC-GCAUGGGUCGCGccac -5'
24442 5' -62.3 NC_005264.1 + 86859 0.66 0.631786
Target:  5'- aGCUAGCGGCGUGUGgggcaaugcuuuCCUcacaGGCgGCGGc- -3'
miRNA:   3'- -CGGUCGCCGCGCAU------------GGG----UCG-CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.