miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 5' -62.3 NC_005264.1 + 84323 1.09 0.000902
Target:  5'- cGCCAGCGGCGCGUACCCAGCGCGGUGc -3'
miRNA:   3'- -CGGUCGCCGCGCAUGGGUCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 25723 0.81 0.089754
Target:  5'- cGgCAGCGGUGCGUACUCGGuCGCGGa- -3'
miRNA:   3'- -CgGUCGCCGCGCAUGGGUC-GCGCCac -5'
24442 5' -62.3 NC_005264.1 + 98324 0.77 0.166933
Target:  5'- -gCGGCGGCGCGgACagaaCAGCGCGGUc -3'
miRNA:   3'- cgGUCGCCGCGCaUGg---GUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 18415 0.75 0.222113
Target:  5'- gGCCGGCgcaGGCGCGcccucucGCUCGGCGCGGg- -3'
miRNA:   3'- -CGGUCG---CCGCGCa------UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 16535 0.74 0.232696
Target:  5'- aGCUcuuAGCGcuuGCGCGUAuUUCAGCGCGGUGg -3'
miRNA:   3'- -CGG---UCGC---CGCGCAU-GGGUCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 113261 0.74 0.238146
Target:  5'- cGCCGGCGGCGUGcGCCgAGaaggugaaGCGGUc -3'
miRNA:   3'- -CGGUCGCCGCGCaUGGgUCg-------CGCCAc -5'
24442 5' -62.3 NC_005264.1 + 95357 0.74 0.242581
Target:  5'- gGCCgacgGGCGGCGCGUGCCgccaaacugccaGGCGUGGg- -3'
miRNA:   3'- -CGG----UCGCCGCGCAUGGg-----------UCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 79416 0.74 0.243701
Target:  5'- gGCC-GCGGCG-GaACCCAGCGUGGg- -3'
miRNA:   3'- -CGGuCGCCGCgCaUGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 81026 0.73 0.269432
Target:  5'- aGCCAGCGGCGCcUACCC-GCcgucuacccucacugGCGcGUGg -3'
miRNA:   3'- -CGGUCGCCGCGcAUGGGuCG---------------CGC-CAC- -5'
24442 5' -62.3 NC_005264.1 + 30115 0.72 0.30529
Target:  5'- uGCgGGCGGCGCGgcACCgAGCuGCGGc- -3'
miRNA:   3'- -CGgUCGCCGCGCa-UGGgUCG-CGCCac -5'
24442 5' -62.3 NC_005264.1 + 139119 0.72 0.318956
Target:  5'- -gCGGCGGCGUGUGCCCuuugGGCGUugagGGUc -3'
miRNA:   3'- cgGUCGCCGCGCAUGGG----UCGCG----CCAc -5'
24442 5' -62.3 NC_005264.1 + 22710 0.72 0.335954
Target:  5'- aGCCAcgaguGCGGCGCGcaagcgugugucugcUGCCCGGUGCuGGg- -3'
miRNA:   3'- -CGGU-----CGCCGCGC---------------AUGGGUCGCG-CCac -5'
24442 5' -62.3 NC_005264.1 + 82361 0.71 0.355103
Target:  5'- uGCCAGgcaGGCGCGUcgAUCCGGUGcCGGg- -3'
miRNA:   3'- -CGGUCg--CCGCGCA--UGGGUCGC-GCCac -5'
24442 5' -62.3 NC_005264.1 + 95464 0.71 0.36267
Target:  5'- cGCCGGCGG-GCGcAgCgAGCGCGGg- -3'
miRNA:   3'- -CGGUCGCCgCGCaUgGgUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 8215 0.71 0.370349
Target:  5'- uGCCccGCGGcCGCugguccgaGUACgCCAGCGCGGUu -3'
miRNA:   3'- -CGGu-CGCC-GCG--------CAUG-GGUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 127849 0.71 0.378138
Target:  5'- gGCCGGCGGuCuaGaACCCGGCGCGcGa- -3'
miRNA:   3'- -CGGUCGCC-GcgCaUGGGUCGCGC-Cac -5'
24442 5' -62.3 NC_005264.1 + 69361 0.71 0.378138
Target:  5'- cGCCAGCaGCGCcu-CagaCAGCGCGGUu -3'
miRNA:   3'- -CGGUCGcCGCGcauGg--GUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 145920 0.7 0.394042
Target:  5'- uCCGGCGGCGgGU---CAGCGCGGg- -3'
miRNA:   3'- cGGUCGCCGCgCAuggGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 107895 0.7 0.402155
Target:  5'- aGCUAGCGGCGCgGUGCgUAuGCGCuGUa -3'
miRNA:   3'- -CGGUCGCCGCG-CAUGgGU-CGCGcCAc -5'
24442 5' -62.3 NC_005264.1 + 77972 0.7 0.410373
Target:  5'- uGCCGGCGccGCGCGUA-CCGGaGCGGg- -3'
miRNA:   3'- -CGGUCGC--CGCGCAUgGGUCgCGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.