miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 5' -62.3 NC_005264.1 + 17020 0.66 0.631786
Target:  5'- gGCaaaGGCGGCGauCGUcGCCagCAGCGCGGc- -3'
miRNA:   3'- -CGg--UCGCCGC--GCA-UGG--GUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 150714 0.66 0.622019
Target:  5'- cUCGGCGGgGC-UGCCCGccaaaggucgcGCGCGGg- -3'
miRNA:   3'- cGGUCGCCgCGcAUGGGU-----------CGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 126297 0.66 0.622019
Target:  5'- cGCCAGgacgaagaCGGCGgG-GCCUAGCGaCGGg- -3'
miRNA:   3'- -CGGUC--------GCCGCgCaUGGGUCGC-GCCac -5'
24442 5' -62.3 NC_005264.1 + 31688 0.66 0.622019
Target:  5'- cUCGGCGGgGC-UGCCCGccaaaggucgcGCGCGGg- -3'
miRNA:   3'- cGGUCGCCgCGcAUGGGU-----------CGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 135013 0.66 0.622019
Target:  5'- -aCAGUGGCGCGaucuagGCCaauGGCGUucGGUGa -3'
miRNA:   3'- cgGUCGCCGCGCa-----UGGg--UCGCG--CCAC- -5'
24442 5' -62.3 NC_005264.1 + 7270 0.66 0.622019
Target:  5'- cGCCAGgacgaagaCGGCGgG-GCCUAGCGaCGGg- -3'
miRNA:   3'- -CGGUC--------GCCGCgCaUGGGUCGC-GCCac -5'
24442 5' -62.3 NC_005264.1 + 69136 0.66 0.622019
Target:  5'- cGCCugaucuGUGGCccGCGcuacUGCCacgguaAGCGCGGUGa -3'
miRNA:   3'- -CGGu-----CGCCG--CGC----AUGGg-----UCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 72469 0.66 0.622019
Target:  5'- cGCCGGuCGGauCGUGUACCggCAGCGuCGGc- -3'
miRNA:   3'- -CGGUC-GCC--GCGCAUGG--GUCGC-GCCac -5'
24442 5' -62.3 NC_005264.1 + 63049 0.66 0.621043
Target:  5'- cGCCAGgGGCGCGUAuCCCAaacaagaagucccGUaUGGUc -3'
miRNA:   3'- -CGGUCgCCGCGCAU-GGGU-------------CGcGCCAc -5'
24442 5' -62.3 NC_005264.1 + 99913 0.67 0.612259
Target:  5'- gGCUuGCGGcCGCGcaaGCCC-GCGCGGc- -3'
miRNA:   3'- -CGGuCGCC-GCGCa--UGGGuCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 98676 0.67 0.612259
Target:  5'- uGCUGGCGGCGCuUGCacaCCGGC-CGGa- -3'
miRNA:   3'- -CGGUCGCCGCGcAUG---GGUCGcGCCac -5'
24442 5' -62.3 NC_005264.1 + 145158 0.67 0.612259
Target:  5'- cGCCAGCGGCuGaCG-AgCCGGCGUGa-- -3'
miRNA:   3'- -CGGUCGCCG-C-GCaUgGGUCGCGCcac -5'
24442 5' -62.3 NC_005264.1 + 103115 0.67 0.602513
Target:  5'- aGCCAauacgucCGGCGCGguaGCcgCCGGCGCGGc- -3'
miRNA:   3'- -CGGUc------GCCGCGCa--UG--GGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 20221 0.67 0.602513
Target:  5'- uUCGGCaGGCGagGUaGCCCGGCGUGGc- -3'
miRNA:   3'- cGGUCG-CCGCg-CA-UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 27657 0.67 0.602513
Target:  5'- gGCCAcGCGGCGCucggACCgAGguaCGCGGcUGg -3'
miRNA:   3'- -CGGU-CGCCGCGca--UGGgUC---GCGCC-AC- -5'
24442 5' -62.3 NC_005264.1 + 140781 0.67 0.602513
Target:  5'- uCCGGCGGCgGCGcUACCguccaaGGCGuCGGUc -3'
miRNA:   3'- cGGUCGCCG-CGC-AUGGg-----UCGC-GCCAc -5'
24442 5' -62.3 NC_005264.1 + 75210 0.67 0.602513
Target:  5'- cCCAcGCGGCuGCaucgGCCCuGCGCGGc- -3'
miRNA:   3'- cGGU-CGCCG-CGca--UGGGuCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 107208 0.67 0.593759
Target:  5'- aGgCGGCGGCGCGcgcgguuggcauucgGCgCCAGCcGCGGc- -3'
miRNA:   3'- -CgGUCGCCGCGCa--------------UG-GGUCG-CGCCac -5'
24442 5' -62.3 NC_005264.1 + 44777 0.67 0.592787
Target:  5'- uGCCcGCGGCGauCGUugCCGacGCcGCGGUc -3'
miRNA:   3'- -CGGuCGCCGC--GCAugGGU--CG-CGCCAc -5'
24442 5' -62.3 NC_005264.1 + 6892 0.67 0.592787
Target:  5'- cGCgAGCcGCGCaGU-CCCAGCGCGcGg- -3'
miRNA:   3'- -CGgUCGcCGCG-CAuGGGUCGCGC-Cac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.