miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 5' -62.3 NC_005264.1 + 439 0.66 0.670784
Target:  5'- uGCCcuAGCGuCuCGUACCUAuGCGCGGUc -3'
miRNA:   3'- -CGG--UCGCcGcGCAUGGGU-CGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 2497 0.68 0.525757
Target:  5'- gGUCGGCGGgccuCGCGcgACuUCAGCGCGGg- -3'
miRNA:   3'- -CGGUCGCC----GCGCa-UG-GGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 3674 0.69 0.49788
Target:  5'- aCUGGCauuGGUGCGggGCCUGGCGCGGa- -3'
miRNA:   3'- cGGUCG---CCGCGCa-UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 5823 0.67 0.56379
Target:  5'- uCCGGCGGCG-GUggccgccacucGCCUGGCcGCGGUu -3'
miRNA:   3'- cGGUCGCCGCgCA-----------UGGGUCG-CGCCAc -5'
24442 5' -62.3 NC_005264.1 + 6892 0.67 0.592787
Target:  5'- cGCgAGCcGCGCaGU-CCCAGCGCGcGg- -3'
miRNA:   3'- -CGgUCGcCGCG-CAuGGGUCGCGC-Cac -5'
24442 5' -62.3 NC_005264.1 + 7270 0.66 0.622019
Target:  5'- cGCCAGgacgaagaCGGCGgG-GCCUAGCGaCGGg- -3'
miRNA:   3'- -CGGUC--------GCCGCgCaUGGGUCGC-GCCac -5'
24442 5' -62.3 NC_005264.1 + 8215 0.71 0.370349
Target:  5'- uGCCccGCGGcCGCugguccgaGUACgCCAGCGCGGUu -3'
miRNA:   3'- -CGGu-CGCC-GCG--------CAUG-GGUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 10519 0.67 0.56379
Target:  5'- cGCCGagcggguccuguGCGGCGCc-GCCCucaggGGCGCGGa- -3'
miRNA:   3'- -CGGU------------CGCCGCGcaUGGG-----UCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 12411 0.69 0.452978
Target:  5'- cGCCccgaGGCGGCccgcuaCGUGCUUggaGGCGCGGUGc -3'
miRNA:   3'- -CGG----UCGCCGc-----GCAUGGG---UCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 16535 0.74 0.232696
Target:  5'- aGCUcuuAGCGcuuGCGCGUAuUUCAGCGCGGUGg -3'
miRNA:   3'- -CGG---UCGC---CGCGCAU-GGGUCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 17020 0.66 0.631786
Target:  5'- gGCaaaGGCGGCGauCGUcGCCagCAGCGCGGc- -3'
miRNA:   3'- -CGg--UCGCCGC--GCA-UGG--GUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 18415 0.75 0.222113
Target:  5'- gGCCGGCgcaGGCGCGcccucucGCUCGGCGCGGg- -3'
miRNA:   3'- -CGGUCG---CCGCGCa------UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 20221 0.67 0.602513
Target:  5'- uUCGGCaGGCGagGUaGCCCGGCGUGGc- -3'
miRNA:   3'- cGGUCG-CCGCg-CA-UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 20258 0.66 0.661059
Target:  5'- gGCCGGCauucaggggacGGUGCGagaagauacUugUCuGCGCGGUGu -3'
miRNA:   3'- -CGGUCG-----------CCGCGC---------AugGGuCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 21902 0.66 0.670784
Target:  5'- uUCGGCGGCGCGUGCggucgUAGUGCuGUc -3'
miRNA:   3'- cGGUCGCCGCGCAUGg----GUCGCGcCAc -5'
24442 5' -62.3 NC_005264.1 + 22710 0.72 0.335954
Target:  5'- aGCCAcgaguGCGGCGCGcaagcgugugucugcUGCCCGGUGCuGGg- -3'
miRNA:   3'- -CGGU-----CGCCGCGC---------------AUGGGUCGCG-CCac -5'
24442 5' -62.3 NC_005264.1 + 24208 0.68 0.554204
Target:  5'- uGCCGGUGGC-CGaAgCCAGCGCGc-- -3'
miRNA:   3'- -CGGUCGCCGcGCaUgGGUCGCGCcac -5'
24442 5' -62.3 NC_005264.1 + 25611 0.68 0.535182
Target:  5'- gGCCGGCGuuGCGgaaCaCGGCGgCGGUGg -3'
miRNA:   3'- -CGGUCGCcgCGCaugG-GUCGC-GCCAC- -5'
24442 5' -62.3 NC_005264.1 + 25668 0.68 0.516395
Target:  5'- -gCAGCGGaacgauCGCGUACUCuGCGUGGa- -3'
miRNA:   3'- cgGUCGCC------GCGCAUGGGuCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 25723 0.81 0.089754
Target:  5'- cGgCAGCGGUGCGUACUCGGuCGCGGa- -3'
miRNA:   3'- -CgGUCGCCGCGCAUGGGUC-GCGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.