miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24442 5' -62.3 NC_005264.1 + 25668 0.68 0.516395
Target:  5'- -gCAGCGGaacgauCGCGUACUCuGCGUGGa- -3'
miRNA:   3'- cgGUCGCC------GCGCAUGGGuCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 64145 0.69 0.461786
Target:  5'- cGCCA-CGGCGCcgcgAUCCGGC-CGGUGu -3'
miRNA:   3'- -CGGUcGCCGCGca--UGGGUCGcGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 108304 0.69 0.470683
Target:  5'- aGUCGGCGGCgaacacuacugGCaUGCCCGGCGCaGUc -3'
miRNA:   3'- -CGGUCGCCG-----------CGcAUGGGUCGCGcCAc -5'
24442 5' -62.3 NC_005264.1 + 146776 0.69 0.479667
Target:  5'- cGCCGcGCGGCG-GUuCUCGGUGCGGc- -3'
miRNA:   3'- -CGGU-CGCCGCgCAuGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 149420 0.69 0.488733
Target:  5'- cUCGGCGGCgGCGgucgcGCgCCGGUGCGGa- -3'
miRNA:   3'- cGGUCGCCG-CGCa----UG-GGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 3674 0.69 0.49788
Target:  5'- aCUGGCauuGGUGCGggGCCUGGCGCGGa- -3'
miRNA:   3'- cGGUCG---CCGCGCa-UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 50582 0.68 0.507101
Target:  5'- aGCgCAcGCGGCGCugagcaGCCCGGCGCuGGa- -3'
miRNA:   3'- -CG-GU-CGCCGCGca----UGGGUCGCG-CCac -5'
24442 5' -62.3 NC_005264.1 + 68731 0.68 0.507101
Target:  5'- aCCAGCGGCGCcagaACCUcGgGCGGg- -3'
miRNA:   3'- cGGUCGCCGCGca--UGGGuCgCGCCac -5'
24442 5' -62.3 NC_005264.1 + 88086 0.68 0.515463
Target:  5'- cGCCaAGCaGuGCGCGUcgggcacagcgucGgCCGGCGCGGUu -3'
miRNA:   3'- -CGG-UCG-C-CGCGCA-------------UgGGUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 131438 0.69 0.452978
Target:  5'- cGCCccgaGGCGGCccgcuaCGUGCUUggaGGCGCGGUGc -3'
miRNA:   3'- -CGG----UCGCCGc-----GCAUGGG---UCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 145546 0.7 0.439079
Target:  5'- cGCUAGCGGUaaccguggccaccauGUuUGCCCAGCGCG-UGg -3'
miRNA:   3'- -CGGUCGCCG---------------CGcAUGGGUCGCGCcAC- -5'
24442 5' -62.3 NC_005264.1 + 77972 0.7 0.410373
Target:  5'- uGCCGGCGccGCGCGUA-CCGGaGCGGg- -3'
miRNA:   3'- -CGGUCGC--CGCGCAUgGGUCgCGCCac -5'
24442 5' -62.3 NC_005264.1 + 18415 0.75 0.222113
Target:  5'- gGCCGGCgcaGGCGCGcccucucGCUCGGCGCGGg- -3'
miRNA:   3'- -CGGUCG---CCGCGCa------UGGGUCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 16535 0.74 0.232696
Target:  5'- aGCUcuuAGCGcuuGCGCGUAuUUCAGCGCGGUGg -3'
miRNA:   3'- -CGG---UCGC---CGCGCAU-GGGUCGCGCCAC- -5'
24442 5' -62.3 NC_005264.1 + 95357 0.74 0.242581
Target:  5'- gGCCgacgGGCGGCGCGUGCCgccaaacugccaGGCGUGGg- -3'
miRNA:   3'- -CGG----UCGCCGCGCAUGGg-----------UCGCGCCac -5'
24442 5' -62.3 NC_005264.1 + 81026 0.73 0.269432
Target:  5'- aGCCAGCGGCGCcUACCC-GCcgucuacccucacugGCGcGUGg -3'
miRNA:   3'- -CGGUCGCCGCGcAUGGGuCG---------------CGC-CAC- -5'
24442 5' -62.3 NC_005264.1 + 30115 0.72 0.30529
Target:  5'- uGCgGGCGGCGCGgcACCgAGCuGCGGc- -3'
miRNA:   3'- -CGgUCGCCGCGCa-UGGgUCG-CGCCac -5'
24442 5' -62.3 NC_005264.1 + 22710 0.72 0.335954
Target:  5'- aGCCAcgaguGCGGCGCGcaagcgugugucugcUGCCCGGUGCuGGg- -3'
miRNA:   3'- -CGGU-----CGCCGCGC---------------AUGGGUCGCG-CCac -5'
24442 5' -62.3 NC_005264.1 + 8215 0.71 0.370349
Target:  5'- uGCCccGCGGcCGCugguccgaGUACgCCAGCGCGGUu -3'
miRNA:   3'- -CGGu-CGCC-GCG--------CAUG-GGUCGCGCCAc -5'
24442 5' -62.3 NC_005264.1 + 145920 0.7 0.394042
Target:  5'- uCCGGCGGCGgGU---CAGCGCGGg- -3'
miRNA:   3'- cGGUCGCCGCgCAuggGUCGCGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.