miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24443 3' -55.2 NC_005264.1 + 119936 0.66 0.947987
Target:  5'- uGUCGcGGGCCGcuGGgGGGAAgGUCGg -3'
miRNA:   3'- gCGGU-UCCGGCucUCgCUCUUgUAGC- -5'
24443 3' -55.2 NC_005264.1 + 910 0.66 0.947987
Target:  5'- uGUCGcGGGCCGcuGGgGGGAAgGUCGg -3'
miRNA:   3'- gCGGU-UCCGGCucUCgCUCUUgUAGC- -5'
24443 3' -55.2 NC_005264.1 + 87627 0.66 0.947987
Target:  5'- cCGCgCAGGGCCGAugcagccgcgugGGGCGcGGGACcuggCGg -3'
miRNA:   3'- -GCG-GUUCCGGCU------------CUCGC-UCUUGua--GC- -5'
24443 3' -55.2 NC_005264.1 + 48063 0.66 0.947559
Target:  5'- gGCCAGggacaucGGCCGAGcGGCGcaGGGACAa-- -3'
miRNA:   3'- gCGGUU-------CCGGCUC-UCGC--UCUUGUagc -5'
24443 3' -55.2 NC_005264.1 + 48660 0.66 0.943605
Target:  5'- cCGCU--GGCacgGGGGGCGAGGAgAUCu -3'
miRNA:   3'- -GCGGuuCCGg--CUCUCGCUCUUgUAGc -5'
24443 3' -55.2 NC_005264.1 + 97095 0.66 0.943605
Target:  5'- gCGCC--GGCCGAcGGCG-GAccacACAUCGu -3'
miRNA:   3'- -GCGGuuCCGGCUcUCGCuCU----UGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 135448 0.66 0.943605
Target:  5'- uCGCCuaagAGGGuaGAG-GCGAGGAuCAUCa -3'
miRNA:   3'- -GCGG----UUCCggCUCuCGCUCUU-GUAGc -5'
24443 3' -55.2 NC_005264.1 + 110115 0.66 0.943605
Target:  5'- aCGacaGGGGCCGAGAGCcgccgcgcuuuuGGGGGCGggCGg -3'
miRNA:   3'- -GCgg-UUCCGGCUCUCG------------CUCUUGUa-GC- -5'
24443 3' -55.2 NC_005264.1 + 123516 0.66 0.93899
Target:  5'- gCGCgAGGGUCGcGAGCGGaggggggacuGGGCGUCc -3'
miRNA:   3'- -GCGgUUCCGGCuCUCGCU----------CUUGUAGc -5'
24443 3' -55.2 NC_005264.1 + 4489 0.66 0.93899
Target:  5'- gCGCgAGGGUCGcGAGCGGaggggggacuGGGCGUCc -3'
miRNA:   3'- -GCGgUUCCGGCuCUCGCU----------CUUGUAGc -5'
24443 3' -55.2 NC_005264.1 + 54137 0.66 0.93899
Target:  5'- gCGCCGGGGUCG-GuGCcGAcuACAUCGa -3'
miRNA:   3'- -GCGGUUCCGGCuCuCG-CUcuUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 159096 0.66 0.93899
Target:  5'- cCGCCGugaaGCCGGcGAucGCGAG-ACGUCGg -3'
miRNA:   3'- -GCGGUuc--CGGCU-CU--CGCUCuUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 153902 0.66 0.937078
Target:  5'- gGCCcgAAGGCCGAGAaacuguuccGCGAGuaccugaagacgcGCGUCu -3'
miRNA:   3'- gCGG--UUCCGGCUCU---------CGCUCu------------UGUAGc -5'
24443 3' -55.2 NC_005264.1 + 129856 0.66 0.934138
Target:  5'- cCGUCAAGGCgGAGcGCGAaa--AUCGg -3'
miRNA:   3'- -GCGGUUCCGgCUCuCGCUcuugUAGC- -5'
24443 3' -55.2 NC_005264.1 + 6120 0.66 0.934138
Target:  5'- aCGuCCAucAGGUgcggGAGGGCGAGGGCcgCGc -3'
miRNA:   3'- -GC-GGU--UCCGg---CUCUCGCUCUUGuaGC- -5'
24443 3' -55.2 NC_005264.1 + 83125 0.66 0.934138
Target:  5'- gCGCCAAGGCCGcGGAG-Gc--GCGUCu -3'
miRNA:   3'- -GCGGUUCCGGC-UCUCgCucuUGUAGc -5'
24443 3' -55.2 NC_005264.1 + 40787 0.66 0.934138
Target:  5'- cCGC--GGcGCCGAGAGCG-GAGCcgCu -3'
miRNA:   3'- -GCGguUC-CGGCUCUCGCuCUUGuaGc -5'
24443 3' -55.2 NC_005264.1 + 125147 0.66 0.934138
Target:  5'- aCGuCCAucAGGUgcggGAGGGCGAGGGCcgCGc -3'
miRNA:   3'- -GC-GGU--UCCGg---CUCUCGCUCUUGuaGC- -5'
24443 3' -55.2 NC_005264.1 + 31272 0.66 0.934138
Target:  5'- gCGCCAGGuGCCGcgcacaugcAGaAGCGuGAGCuUCGc -3'
miRNA:   3'- -GCGGUUC-CGGC---------UC-UCGCuCUUGuAGC- -5'
24443 3' -55.2 NC_005264.1 + 150606 0.66 0.92905
Target:  5'- gCGCCAgagguGGGgCGAGucugcucucuGGCGAGGcggcgcGCAUCGc -3'
miRNA:   3'- -GCGGU-----UCCgGCUC----------UCGCUCU------UGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.