miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24443 3' -55.2 NC_005264.1 + 80494 1.08 0.004233
Target:  5'- cCGCCAAGGCCGAGAGCGAGAACAUCGc -3'
miRNA:   3'- -GCGGUUCCGGCUCUCGCUCUUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 130313 0.79 0.301655
Target:  5'- aGCCAGGGCCGAGGaUGGGucGCAUCGu -3'
miRNA:   3'- gCGGUUCCGGCUCUcGCUCu-UGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 25144 0.79 0.323078
Target:  5'- gGCCGAguaguuGGCCGuGAGCGAGGACGUgGc -3'
miRNA:   3'- gCGGUU------CCGGCuCUCGCUCUUGUAgC- -5'
24443 3' -55.2 NC_005264.1 + 99078 0.75 0.483654
Target:  5'- aGCCAAGGCCGA--GCGAGAAgAUa- -3'
miRNA:   3'- gCGGUUCCGGCUcuCGCUCUUgUAgc -5'
24443 3' -55.2 NC_005264.1 + 8138 0.75 0.493165
Target:  5'- aCGCCGAGGUCGGGucUGAGAACG-CGa -3'
miRNA:   3'- -GCGGUUCCGGCUCucGCUCUUGUaGC- -5'
24443 3' -55.2 NC_005264.1 + 127165 0.75 0.493165
Target:  5'- aCGCCGAGGUCGGGucUGAGAACG-CGa -3'
miRNA:   3'- -GCGGUUCCGGCUCucGCUCUUGUaGC- -5'
24443 3' -55.2 NC_005264.1 + 115911 0.73 0.622676
Target:  5'- aCGCCAAGGagaCGAGcGGCGAGAcCAUa- -3'
miRNA:   3'- -GCGGUUCCg--GCUC-UCGCUCUuGUAgc -5'
24443 3' -55.2 NC_005264.1 + 64409 0.73 0.622676
Target:  5'- gGCCAAGGCCGAcGccgcgggcacGGCGAuGACGUCu -3'
miRNA:   3'- gCGGUUCCGGCU-C----------UCGCUcUUGUAGc -5'
24443 3' -55.2 NC_005264.1 + 125220 0.72 0.663456
Target:  5'- uCGCCAuGGCCGu--GCGAGAcGCGUCc -3'
miRNA:   3'- -GCGGUuCCGGCucuCGCUCU-UGUAGc -5'
24443 3' -55.2 NC_005264.1 + 6193 0.72 0.663456
Target:  5'- uCGCCAuGGCCGu--GCGAGAcGCGUCc -3'
miRNA:   3'- -GCGGUuCCGGCucuCGCUCU-UGUAGc -5'
24443 3' -55.2 NC_005264.1 + 152952 0.72 0.683728
Target:  5'- cCGCCAGGGCUGGGAaggccguggcGCGccGGGACcgCGc -3'
miRNA:   3'- -GCGGUUCCGGCUCU----------CGC--UCUUGuaGC- -5'
24443 3' -55.2 NC_005264.1 + 116403 0.72 0.683728
Target:  5'- aGCCGcAGGCCGAcgucGAGCGcAGGGCggCGu -3'
miRNA:   3'- gCGGU-UCCGGCU----CUCGC-UCUUGuaGC- -5'
24443 3' -55.2 NC_005264.1 + 37568 0.72 0.693805
Target:  5'- gCGCCGccGCgGAGGGCGAaGAACAagUCGc -3'
miRNA:   3'- -GCGGUucCGgCUCUCGCU-CUUGU--AGC- -5'
24443 3' -55.2 NC_005264.1 + 114173 0.71 0.703831
Target:  5'- gGCgGAGGUCGAGuGuCGGGuAACGUCGc -3'
miRNA:   3'- gCGgUUCCGGCUCuC-GCUC-UUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 54656 0.71 0.703831
Target:  5'- aCGCCAGGGUCGcgccGAcUGGGGACAUCa -3'
miRNA:   3'- -GCGGUUCCGGCu---CUcGCUCUUGUAGc -5'
24443 3' -55.2 NC_005264.1 + 148641 0.71 0.733511
Target:  5'- cCGCCGuGGCCGAugGGGCGAcGGCgAUCGc -3'
miRNA:   3'- -GCGGUuCCGGCU--CUCGCUcUUG-UAGC- -5'
24443 3' -55.2 NC_005264.1 + 44008 0.71 0.733511
Target:  5'- gGgCAGGGUCGAGgugGGCcauacgGAGAACAUCGa -3'
miRNA:   3'- gCgGUUCCGGCUC---UCG------CUCUUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 48615 0.71 0.743241
Target:  5'- aCGCguAGGCCGGGgaGGUGGGcaagccGGCGUCGg -3'
miRNA:   3'- -GCGguUCCGGCUC--UCGCUC------UUGUAGC- -5'
24443 3' -55.2 NC_005264.1 + 59977 0.71 0.752876
Target:  5'- aGCCAcgcggcgguGGCCGcGAGCGAGAcgGCcgCGu -3'
miRNA:   3'- gCGGUu--------CCGGCuCUCGCUCU--UGuaGC- -5'
24443 3' -55.2 NC_005264.1 + 55025 0.7 0.770881
Target:  5'- uCGCCAA-GCCccucaugagcguaGAGAGCGAGggUcUCGa -3'
miRNA:   3'- -GCGGUUcCGG-------------CUCUCGCUCuuGuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.