miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24443 5' -54.6 NC_005264.1 + 84620 0.66 0.955772
Target:  5'- uGCAGCGUUGcuccguacgUGCCCCUG-GCGGUGu -3'
miRNA:   3'- gCGUUGCAGCa--------GCGGGGGUuUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 106453 0.66 0.955772
Target:  5'- uGCGAuCGUCG-CGCCUCaGGGCAGa- -3'
miRNA:   3'- gCGUU-GCAGCaGCGGGGgUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 109671 0.66 0.955772
Target:  5'- -uCGACGUgGaacUCGCCCaagaCGAGCAGUAc -3'
miRNA:   3'- gcGUUGCAgC---AGCGGGg---GUUUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 57777 0.66 0.954603
Target:  5'- gGCuucGCGUCGUCuaGCUCCUcgcgauucacgucaAAGCAGUAg -3'
miRNA:   3'- gCGu--UGCAGCAG--CGGGGG--------------UUUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 86779 0.66 0.951795
Target:  5'- uCGCGGCGUCGcggCGUCUCUGcAACGGg- -3'
miRNA:   3'- -GCGUUGCAGCa--GCGGGGGU-UUGUCau -5'
24443 5' -54.6 NC_005264.1 + 52693 0.66 0.951795
Target:  5'- cCGCGGCGgguuUCGccgccCGCCCCCAAaagcGCGGc- -3'
miRNA:   3'- -GCGUUGC----AGCa----GCGGGGGUU----UGUCau -5'
24443 5' -54.6 NC_005264.1 + 144647 0.66 0.950557
Target:  5'- uCGUGGCaugaauggacuaguGUUuUCGCCCCCAcGACAGUGg -3'
miRNA:   3'- -GCGUUG--------------CAGcAGCGGGGGU-UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 63692 0.66 0.947586
Target:  5'- cCGCGAUGUCGUCGaucucgUCCCAuacGCuGUGg -3'
miRNA:   3'- -GCGUUGCAGCAGCg-----GGGGUu--UGuCAU- -5'
24443 5' -54.6 NC_005264.1 + 105872 0.66 0.947586
Target:  5'- gGCGACGagggacUCGUCGCCgCCAcAGCAu-- -3'
miRNA:   3'- gCGUUGC------AGCAGCGGgGGU-UUGUcau -5'
24443 5' -54.6 NC_005264.1 + 22212 0.66 0.947152
Target:  5'- gCGCGGCaaguggaGUCGUCGCCUCgucGGCGGUc -3'
miRNA:   3'- -GCGUUG-------CAGCAGCGGGGgu-UUGUCAu -5'
24443 5' -54.6 NC_005264.1 + 16017 0.66 0.94314
Target:  5'- gGCGACGacCGccgCGCCUCCGuGCAGUc -3'
miRNA:   3'- gCGUUGCa-GCa--GCGGGGGUuUGUCAu -5'
24443 5' -54.6 NC_005264.1 + 158157 0.66 0.94314
Target:  5'- aCGCGGCGcCacUCGCCCCgAcGCAGg- -3'
miRNA:   3'- -GCGUUGCaGc-AGCGGGGgUuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 39130 0.66 0.94314
Target:  5'- aCGCGGCGcCacUCGCCCCgAcGCAGg- -3'
miRNA:   3'- -GCGUUGCaGc-AGCGGGGgUuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 92972 0.66 0.940358
Target:  5'- gCGCGaaGCG-CGUCcgccguaggggcgauGCUCCCAAGCAGg- -3'
miRNA:   3'- -GCGU--UGCaGCAG---------------CGGGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 35047 0.67 0.933531
Target:  5'- gCGCGACGUCGUCaGCCU--AGACAa-- -3'
miRNA:   3'- -GCGUUGCAGCAG-CGGGggUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 103042 0.67 0.922957
Target:  5'- aGCAugGUgCGcuacgCGCCCCCu-GCGGg- -3'
miRNA:   3'- gCGUugCA-GCa----GCGGGGGuuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 139523 0.67 0.917306
Target:  5'- cCGCGAUGUUGUgGCCCgCCGcACucGUGg -3'
miRNA:   3'- -GCGUUGCAGCAgCGGG-GGUuUGu-CAU- -5'
24443 5' -54.6 NC_005264.1 + 116572 0.67 0.910208
Target:  5'- gCGCAGC-UCGgcgaccccuaaaCGCCCCCAGgcGCGGUc -3'
miRNA:   3'- -GCGUUGcAGCa-----------GCGGGGGUU--UGUCAu -5'
24443 5' -54.6 NC_005264.1 + 30074 0.67 0.905284
Target:  5'- uCGuCGGCGcCGcCGCgCCCGGACAGa- -3'
miRNA:   3'- -GC-GUUGCaGCaGCGgGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 39968 0.67 0.905284
Target:  5'- aCGCAGuCGUCGUCucguccauuugGUCCCacgcGACAGUAa -3'
miRNA:   3'- -GCGUU-GCAGCAG-----------CGGGGgu--UUGUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.