miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24443 5' -54.6 NC_005264.1 + 7871 0.72 0.679577
Target:  5'- gGCGGCGUCGgCGCCCCagauGCGGc- -3'
miRNA:   3'- gCGUUGCAGCaGCGGGGguu-UGUCau -5'
24443 5' -54.6 NC_005264.1 + 8321 0.7 0.805592
Target:  5'- cCGCGGCGUCGccgUCGUCCCCu-AgGGUu -3'
miRNA:   3'- -GCGUUGCAGC---AGCGGGGGuuUgUCAu -5'
24443 5' -54.6 NC_005264.1 + 13883 0.7 0.787456
Target:  5'- uGCucuacGCGUCGUCGCCUgCAGGCGa-- -3'
miRNA:   3'- gCGu----UGCAGCAGCGGGgGUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 16017 0.66 0.94314
Target:  5'- gGCGACGacCGccgCGCCUCCGuGCAGUc -3'
miRNA:   3'- gCGUUGCa-GCa--GCGGGGGUuUGUCAu -5'
24443 5' -54.6 NC_005264.1 + 22212 0.66 0.947152
Target:  5'- gCGCGGCaaguggaGUCGUCGCCUCgucGGCGGUc -3'
miRNA:   3'- -GCGUUG-------CAGCAGCGGGGgu-UUGUCAu -5'
24443 5' -54.6 NC_005264.1 + 22850 0.72 0.699907
Target:  5'- aGCAACGUCGUC-CUCCCuGACAcGUc -3'
miRNA:   3'- gCGUUGCAGCAGcGGGGGuUUGU-CAu -5'
24443 5' -54.6 NC_005264.1 + 30074 0.67 0.905284
Target:  5'- uCGuCGGCGcCGcCGCgCCCGGACAGa- -3'
miRNA:   3'- -GC-GUUGCaGCaGCGgGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 30550 0.68 0.878417
Target:  5'- gCGCGAacccUCGUCGUCCuCCGAGuCGGUAg -3'
miRNA:   3'- -GCGUUgc--AGCAGCGGG-GGUUU-GUCAU- -5'
24443 5' -54.6 NC_005264.1 + 32577 0.68 0.871134
Target:  5'- cCGCAACGUCGcgcaccCGCgCCCAAAaGGUu -3'
miRNA:   3'- -GCGUUGCAGCa-----GCGgGGGUUUgUCAu -5'
24443 5' -54.6 NC_005264.1 + 35047 0.67 0.933531
Target:  5'- gCGCGACGUCGUCaGCCU--AGACAa-- -3'
miRNA:   3'- -GCGUUGCAGCAG-CGGGggUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 35952 0.69 0.855921
Target:  5'- gGCGcCGaCGcCGCCCCCAcaaucuAGCGGUAg -3'
miRNA:   3'- gCGUuGCaGCaGCGGGGGU------UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 36009 0.68 0.898915
Target:  5'- aGCGACGaggCGUUGCCCgCCAAuacucugagcgaGCGGg- -3'
miRNA:   3'- gCGUUGCa--GCAGCGGG-GGUU------------UGUCau -5'
24443 5' -54.6 NC_005264.1 + 39130 0.66 0.94314
Target:  5'- aCGCGGCGcCacUCGCCCCgAcGCAGg- -3'
miRNA:   3'- -GCGUUGCaGc-AGCGGGGgUuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 39968 0.67 0.905284
Target:  5'- aCGCAGuCGUCGUCucguccauuugGUCCCacgcGACAGUAa -3'
miRNA:   3'- -GCGUU-GCAGCAG-----------CGGGGgu--UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 40420 0.7 0.793872
Target:  5'- gCGCAccgaccccGCGuuccggagaagcccUCGcCGCCCCCAGACGGa- -3'
miRNA:   3'- -GCGU--------UGC--------------AGCaGCGGGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 41025 0.68 0.878417
Target:  5'- gGCAGCgGUCGagGgccgaccacUCCCCAGACGGUAc -3'
miRNA:   3'- gCGUUG-CAGCagC---------GGGGGUUUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 46395 0.69 0.839889
Target:  5'- cCGCccCGaUCGUCGCCCCC--GCGGc- -3'
miRNA:   3'- -GCGuuGC-AGCAGCGGGGGuuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 47036 0.73 0.659089
Target:  5'- aGCGACGUUGcauugauucguUCGCCCCCGuaaAACAcGUAg -3'
miRNA:   3'- gCGUUGCAGC-----------AGCGGGGGU---UUGU-CAU- -5'
24443 5' -54.6 NC_005264.1 + 52449 0.72 0.699907
Target:  5'- aGCAGCGUCagcaugCGCCCgCCGucGGCGGUAu -3'
miRNA:   3'- gCGUUGCAGca----GCGGG-GGU--UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 52693 0.66 0.951795
Target:  5'- cCGCGGCGgguuUCGccgccCGCCCCCAAaagcGCGGc- -3'
miRNA:   3'- -GCGUUGC----AGCa----GCGGGGGUU----UGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.