miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24443 5' -54.6 NC_005264.1 + 103042 0.67 0.922957
Target:  5'- aGCAugGUgCGcuacgCGCCCCCu-GCGGg- -3'
miRNA:   3'- gCGUugCA-GCa----GCGGGGGuuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 32577 0.68 0.871134
Target:  5'- cCGCAACGUCGcgcaccCGCgCCCAAAaGGUu -3'
miRNA:   3'- -GCGUUGCAGCa-----GCGgGGGUUUgUCAu -5'
24443 5' -54.6 NC_005264.1 + 149577 0.68 0.878417
Target:  5'- gCGCGAacccUCGUCGUCCuCCGAGuCGGUAg -3'
miRNA:   3'- -GCGUUgc--AGCAGCGGG-GGUUU-GUCAU- -5'
24443 5' -54.6 NC_005264.1 + 160052 0.68 0.878417
Target:  5'- gGCAGCgGUCGagGgccgaccacUCCCCAGACGGUAc -3'
miRNA:   3'- gCGUUG-CAGCagC---------GGGGGUUUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 36009 0.68 0.898915
Target:  5'- aGCGACGaggCGUUGCCCgCCAAuacucugagcgaGCGGg- -3'
miRNA:   3'- gCGUUGCa--GCAGCGGG-GGUU------------UGUCau -5'
24443 5' -54.6 NC_005264.1 + 30074 0.67 0.905284
Target:  5'- uCGuCGGCGcCGcCGCgCCCGGACAGa- -3'
miRNA:   3'- -GC-GUUGCaGCaGCGgGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 39968 0.67 0.905284
Target:  5'- aCGCAGuCGUCGUCucguccauuugGUCCCacgcGACAGUAa -3'
miRNA:   3'- -GCGUU-GCAGCAG-----------CGGGGgu--UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 116572 0.67 0.910208
Target:  5'- gCGCAGC-UCGgcgaccccuaaaCGCCCCCAGgcGCGGUc -3'
miRNA:   3'- -GCGUUGcAGCa-----------GCGGGGGUU--UGUCAu -5'
24443 5' -54.6 NC_005264.1 + 139523 0.67 0.917306
Target:  5'- cCGCGAUGUUGUgGCCCgCCGcACucGUGg -3'
miRNA:   3'- -GCGUUGCAGCAgCGGG-GGUuUGu-CAU- -5'
24443 5' -54.6 NC_005264.1 + 62736 0.69 0.863633
Target:  5'- cCGCAaccGCGUCGUCGCugagCCCC--GCGGc- -3'
miRNA:   3'- -GCGU---UGCAGCAGCG----GGGGuuUGUCau -5'
24443 5' -54.6 NC_005264.1 + 154979 0.69 0.855921
Target:  5'- gGCGcCGaCGcCGCCCCCAcaaucuAGCGGUAg -3'
miRNA:   3'- gCGUuGCaGCaGCGGGGGU------UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 76829 0.69 0.855921
Target:  5'- aGCGugGUCGUguacUGCCCaCCGAGCGc-- -3'
miRNA:   3'- gCGUugCAGCA----GCGGG-GGUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 126897 0.72 0.679577
Target:  5'- gGCGGCGUCGgCGCCCCagauGCGGc- -3'
miRNA:   3'- gCGUUGCAGCaGCGGGGguu-UGUCau -5'
24443 5' -54.6 NC_005264.1 + 52449 0.72 0.699907
Target:  5'- aGCAGCGUCagcaugCGCCCgCCGucGGCGGUAu -3'
miRNA:   3'- gCGUUGCAGca----GCGGG-GGU--UUGUCAU- -5'
24443 5' -54.6 NC_005264.1 + 146232 0.71 0.768754
Target:  5'- cCGCGGCGUCGUgGCgCCCgGAAUAc-- -3'
miRNA:   3'- -GCGUUGCAGCAgCG-GGGgUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 13883 0.7 0.787456
Target:  5'- uGCucuacGCGUCGUCGCCUgCAGGCGa-- -3'
miRNA:   3'- gCGu----UGCAGCAGCGGGgGUUUGUcau -5'
24443 5' -54.6 NC_005264.1 + 159447 0.7 0.793872
Target:  5'- gCGCAccgaccccGCGuuccggagaagcccUCGcCGCCCCCAGACGGa- -3'
miRNA:   3'- -GCGU--------UGC--------------AGCaGCGGGGGUUUGUCau -5'
24443 5' -54.6 NC_005264.1 + 127348 0.7 0.805592
Target:  5'- cCGCGGCGUCGccgUCGUCCCCu-AgGGUu -3'
miRNA:   3'- -GCGUUGCAGC---AGCGGGGGuuUgUCAu -5'
24443 5' -54.6 NC_005264.1 + 157936 0.69 0.848004
Target:  5'- uCGCAucuuCGUCGcUCGCCUCC--GCGGUc -3'
miRNA:   3'- -GCGUu---GCAGC-AGCGGGGGuuUGUCAu -5'
24443 5' -54.6 NC_005264.1 + 82958 0.69 0.851195
Target:  5'- uGCGACgGUCGccgccgCGCCCCCGugacgaagguacgguGAUAGUAc -3'
miRNA:   3'- gCGUUG-CAGCa-----GCGGGGGU---------------UUGUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.