Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24444 | 3' | -60.8 | NC_005264.1 | + | 80123 | 1.1 | 0.000995 |
Target: 5'- aGCGGUCCGCAAGGGGCCGCUGUCGUGg -3' miRNA: 3'- -CGCCAGGCGUUCCCCGGCGACAGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 42914 | 0.74 | 0.299043 |
Target: 5'- cGCGGcCCGCGAcacGGGGCCGUacacccaGUCGUa -3' miRNA: 3'- -CGCCaGGCGUU---CCCCGGCGa------CAGCAc -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 161941 | 0.74 | 0.305754 |
Target: 5'- aGCGGcCCGCGAcacGGGGCCGUacacccaGUCGUa -3' miRNA: 3'- -CGCCaGGCGUU---CCCCGGCGa------CAGCAc -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 3808 | 0.73 | 0.338835 |
Target: 5'- gGCGGUCCGCGAguucgggcccgggcGGGGCCGCagGagGa- -3' miRNA: 3'- -CGCCAGGCGUU--------------CCCCGGCGa-CagCac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 122834 | 0.73 | 0.338835 |
Target: 5'- gGCGGUCCGCGAguucgggcccgggcGGGGCCGCagGagGa- -3' miRNA: 3'- -CGCCAGGCGUU--------------CCCCGGCGa-CagCac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 20298 | 0.71 | 0.428539 |
Target: 5'- uGCGGcCC-CGAGGGGCugagguCGCUGuaUCGUGg -3' miRNA: 3'- -CGCCaGGcGUUCCCCG------GCGAC--AGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 162490 | 0.7 | 0.481513 |
Target: 5'- -aGGUcuggcaugucCCGCAAGGGGuuGUUGUUGg- -3' miRNA: 3'- cgCCA----------GGCGUUCCCCggCGACAGCac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 3614 | 0.7 | 0.490652 |
Target: 5'- cGCGGggggCCGCGAGggcGGGCgCGCUGacauUCGUc -3' miRNA: 3'- -CGCCa---GGCGUUC---CCCG-GCGAC----AGCAc -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 122641 | 0.7 | 0.490652 |
Target: 5'- cGCGGggggCCGCGAGggcGGGCgCGCUGacauUCGUc -3' miRNA: 3'- -CGCCa---GGCGUUC---CCCG-GCGAC----AGCAc -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 47447 | 0.69 | 0.527022 |
Target: 5'- -gGGUauagaugccaagaCCGCcccuGGGGGuuGUUGUCGUGa -3' miRNA: 3'- cgCCA-------------GGCGu---UCCCCggCGACAGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 51927 | 0.69 | 0.566288 |
Target: 5'- gGUcGUCCGCGccgagcuuggcgAGGGuGCCGCUaacgcGUCGUGu -3' miRNA: 3'- -CGcCAGGCGU------------UCCC-CGGCGA-----CAGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 158504 | 0.68 | 0.604303 |
Target: 5'- cGCGcucagCCGCcAGGGGCaggccugCGCUGUgGUGg -3' miRNA: 3'- -CGCca---GGCGuUCCCCG-------GCGACAgCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 39477 | 0.68 | 0.604303 |
Target: 5'- cGCGcucagCCGCcAGGGGCaggccugCGCUGUgGUGg -3' miRNA: 3'- -CGCca---GGCGuUCCCCG-------GCGACAgCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 111285 | 0.68 | 0.615094 |
Target: 5'- aCGGUgCGUacgagaacGAGGGGCUGCUG-CGg- -3' miRNA: 3'- cGCCAgGCG--------UUCCCCGGCGACaGCac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 11640 | 0.68 | 0.634744 |
Target: 5'- aCGGUaucagCGCGGcaGGGCUGCUGUCGUc -3' miRNA: 3'- cGCCAg----GCGUUc-CCCGGCGACAGCAc -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 113037 | 0.67 | 0.64457 |
Target: 5'- cGCGG-CCGCGAcuGGGCCGCgg-CGa- -3' miRNA: 3'- -CGCCaGGCGUUc-CCCGGCGacaGCac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 5014 | 0.67 | 0.654387 |
Target: 5'- aGCGGUuuGCGcagAGGaGGCCacgagguuccGC-GUCGUGg -3' miRNA: 3'- -CGCCAggCGU---UCC-CCGG----------CGaCAGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 104833 | 0.67 | 0.654387 |
Target: 5'- gGCcuGUCCGCc-GGGGCCGCUGa---- -3' miRNA: 3'- -CGc-CAGGCGuuCCCCGGCGACagcac -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 39094 | 0.67 | 0.654387 |
Target: 5'- gGCGGgcagCgGCGucuGGaccaGCUGCUGUCGUGg -3' miRNA: 3'- -CGCCa---GgCGUu--CCc---CGGCGACAGCAC- -5' |
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24444 | 3' | -60.8 | NC_005264.1 | + | 158121 | 0.67 | 0.654387 |
Target: 5'- gGCGGgcagCgGCGucuGGaccaGCUGCUGUCGUGg -3' miRNA: 3'- -CGCCa---GgCGUu--CCc---CGGCGACAGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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