miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 3' -60.8 NC_005264.1 + 51927 0.69 0.566288
Target:  5'- gGUcGUCCGCGccgagcuuggcgAGGGuGCCGCUaacgcGUCGUGu -3'
miRNA:   3'- -CGcCAGGCGU------------UCCC-CGGCGA-----CAGCAC- -5'
24444 3' -60.8 NC_005264.1 + 47447 0.69 0.527022
Target:  5'- -gGGUauagaugccaagaCCGCcccuGGGGGuuGUUGUCGUGa -3'
miRNA:   3'- cgCCA-------------GGCGu---UCCCCggCGACAGCAC- -5'
24444 3' -60.8 NC_005264.1 + 3614 0.7 0.490652
Target:  5'- cGCGGggggCCGCGAGggcGGGCgCGCUGacauUCGUc -3'
miRNA:   3'- -CGCCa---GGCGUUC---CCCG-GCGAC----AGCAc -5'
24444 3' -60.8 NC_005264.1 + 122641 0.7 0.490652
Target:  5'- cGCGGggggCCGCGAGggcGGGCgCGCUGacauUCGUc -3'
miRNA:   3'- -CGCCa---GGCGUUC---CCCG-GCGAC----AGCAc -5'
24444 3' -60.8 NC_005264.1 + 162490 0.7 0.481513
Target:  5'- -aGGUcuggcaugucCCGCAAGGGGuuGUUGUUGg- -3'
miRNA:   3'- cgCCA----------GGCGUUCCCCggCGACAGCac -5'
24444 3' -60.8 NC_005264.1 + 20298 0.71 0.428539
Target:  5'- uGCGGcCC-CGAGGGGCugagguCGCUGuaUCGUGg -3'
miRNA:   3'- -CGCCaGGcGUUCCCCG------GCGAC--AGCAC- -5'
24444 3' -60.8 NC_005264.1 + 122834 0.73 0.338835
Target:  5'- gGCGGUCCGCGAguucgggcccgggcGGGGCCGCagGagGa- -3'
miRNA:   3'- -CGCCAGGCGUU--------------CCCCGGCGa-CagCac -5'
24444 3' -60.8 NC_005264.1 + 3808 0.73 0.338835
Target:  5'- gGCGGUCCGCGAguucgggcccgggcGGGGCCGCagGagGa- -3'
miRNA:   3'- -CGCCAGGCGUU--------------CCCCGGCGa-CagCac -5'
24444 3' -60.8 NC_005264.1 + 161941 0.74 0.305754
Target:  5'- aGCGGcCCGCGAcacGGGGCCGUacacccaGUCGUa -3'
miRNA:   3'- -CGCCaGGCGUU---CCCCGGCGa------CAGCAc -5'
24444 3' -60.8 NC_005264.1 + 42914 0.74 0.299043
Target:  5'- cGCGGcCCGCGAcacGGGGCCGUacacccaGUCGUa -3'
miRNA:   3'- -CGCCaGGCGUU---CCCCGGCGa------CAGCAc -5'
24444 3' -60.8 NC_005264.1 + 80123 1.1 0.000995
Target:  5'- aGCGGUCCGCAAGGGGCCGCUGUCGUGg -3'
miRNA:   3'- -CGCCAGGCGUUCCCCGGCGACAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.