miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 31861 0.66 0.996947
Target:  5'- gGGCGCgaccucgucagGCAAGuggacuuucACCCCAgCGGcGACCg -3'
miRNA:   3'- -UCGUG-----------UGUUCu--------UGGGGUgGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 18182 0.66 0.996947
Target:  5'- cGCucgGCGCAAGAAUgCCggcuaACCGGUuuuACCu -3'
miRNA:   3'- uCG---UGUGUUCUUGgGG-----UGGCUAu--UGG- -5'
24444 5' -50.6 NC_005264.1 + 20020 0.66 0.996947
Target:  5'- uGGCGCGauuguGGAGUCCUACC-AUGGCCu -3'
miRNA:   3'- -UCGUGUgu---UCUUGGGGUGGcUAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 23417 0.66 0.996947
Target:  5'- gAGCACGCGu--ACgCCAgCGGUGcCCg -3'
miRNA:   3'- -UCGUGUGUucuUGgGGUgGCUAUuGG- -5'
24444 5' -50.6 NC_005264.1 + 138495 0.66 0.996947
Target:  5'- gAGCG-GCGGGGauauGCCCCGCCGuucACUg -3'
miRNA:   3'- -UCGUgUGUUCU----UGGGGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 89837 0.66 0.996947
Target:  5'- gGGCGC-CAGGAGCuUUCugCGGUGuCCc -3'
miRNA:   3'- -UCGUGuGUUCUUG-GGGugGCUAUuGG- -5'
24444 5' -50.6 NC_005264.1 + 150486 0.66 0.996947
Target:  5'- ----gACGAGAGCgUCGCCGAUGGgCg -3'
miRNA:   3'- ucgugUGUUCUUGgGGUGGCUAUUgG- -5'
24444 5' -50.6 NC_005264.1 + 31459 0.66 0.996947
Target:  5'- ----gACGAGAGCgUCGCCGAUGGgCg -3'
miRNA:   3'- ucgugUGUUCUUGgGGUGGCUAUUgG- -5'
24444 5' -50.6 NC_005264.1 + 109116 0.66 0.996947
Target:  5'- gGGCACgACGAGAcggACUcguUCGCCGAgaUGAUCg -3'
miRNA:   3'- -UCGUG-UGUUCU---UGG---GGUGGCU--AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 160481 0.66 0.996947
Target:  5'- -aUACGCGuaaAGAACCCCGuccCCGA--ACCc -3'
miRNA:   3'- ucGUGUGU---UCUUGGGGU---GGCUauUGG- -5'
24444 5' -50.6 NC_005264.1 + 90099 0.66 0.996947
Target:  5'- cAGCGgACAGG---CCCGCCGAaguguACCg -3'
miRNA:   3'- -UCGUgUGUUCuugGGGUGGCUau---UGG- -5'
24444 5' -50.6 NC_005264.1 + 150887 0.66 0.996947
Target:  5'- gGGCGCgaccucgucagGCAAGuggacuuucACCCCAgCGGcGACCg -3'
miRNA:   3'- -UCGUG-----------UGUUCu--------UGGGGUgGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 147098 0.66 0.996947
Target:  5'- cGCACACAuaaucaAGCCaggCCGCCGu--GCCg -3'
miRNA:   3'- uCGUGUGUuc----UUGG---GGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 75707 0.66 0.996896
Target:  5'- cGGCGCG-AAGAcuggugcGCCCCgcgggcGCCGGaGGCCa -3'
miRNA:   3'- -UCGUGUgUUCU-------UGGGG------UGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 132115 0.66 0.996403
Target:  5'- uGCGCGgGaAGAGCCUC-CUGAU-GCCg -3'
miRNA:   3'- uCGUGUgU-UCUUGGGGuGGCUAuUGG- -5'
24444 5' -50.6 NC_005264.1 + 158167 0.66 0.996403
Target:  5'- cAGCuuuCGCAGGcaAACCCCuccucguuCCGcuuGUAACCu -3'
miRNA:   3'- -UCGu--GUGUUC--UUGGGGu-------GGC---UAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 36658 0.66 0.996403
Target:  5'- uGCGCGgAuGGACCUgGCCGc-GACCa -3'
miRNA:   3'- uCGUGUgUuCUUGGGgUGGCuaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 63014 0.66 0.996403
Target:  5'- uGGCGCACuccAGccuuACCCCGgggUCGGcGACCa -3'
miRNA:   3'- -UCGUGUGu--UCu---UGGGGU---GGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 59809 0.66 0.996403
Target:  5'- uAGCGCACc--AugCUUGCCGGUAGCg -3'
miRNA:   3'- -UCGUGUGuucUugGGGUGGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 15913 0.66 0.996403
Target:  5'- uGCGC-CAcGAACUacugCC-CCGAUAGCCc -3'
miRNA:   3'- uCGUGuGUuCUUGG----GGuGGCUAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.