miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 156957 0.66 0.993088
Target:  5'- cGCAgACGAGAggucuagagaacucGCCCUcccccucgauagGgCGAUAACCg -3'
miRNA:   3'- uCGUgUGUUCU--------------UGGGG------------UgGCUAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 159596 0.66 0.995077
Target:  5'- gAGCGacaGCAAGAGCUgaACCGGcAGCUg -3'
miRNA:   3'- -UCGUg--UGUUCUUGGggUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 8330 0.66 0.995077
Target:  5'- uGCGCGCGGcauguGcGCCCCGCaGAccuUAACCg -3'
miRNA:   3'- uCGUGUGUU-----CuUGGGGUGgCU---AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 3135 0.66 0.99402
Target:  5'- cGUACACAugucauccgugggcAGGGCaagaCCACCGAacgcguccuUGGCCu -3'
miRNA:   3'- uCGUGUGU--------------UCUUGg---GGUGGCU---------AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 33270 0.66 0.993379
Target:  5'- gAGCGCGCAAGAucgguGCCacgaCCACgCGGcGACg -3'
miRNA:   3'- -UCGUGUGUUCU-----UGG----GGUG-GCUaUUGg -5'
24444 5' -50.6 NC_005264.1 + 58426 0.66 0.993379
Target:  5'- uAGCGCugAAGAACaggucUCCGCCuucGAUGuCCu -3'
miRNA:   3'- -UCGUGugUUCUUG-----GGGUGG---CUAUuGG- -5'
24444 5' -50.6 NC_005264.1 + 83756 0.66 0.993379
Target:  5'- cGGCAgACA---GCCCuCGCCGGUGAgUa -3'
miRNA:   3'- -UCGUgUGUucuUGGG-GUGGCUAUUgG- -5'
24444 5' -50.6 NC_005264.1 + 21372 0.66 0.995783
Target:  5'- cGGC-CGguGGAaagagGCCCCGCCGcucGCCu -3'
miRNA:   3'- -UCGuGUguUCU-----UGGGGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 46020 0.66 0.993379
Target:  5'- gGGcCAUACucGAACCCgCugGCCGAU-GCCa -3'
miRNA:   3'- -UC-GUGUGuuCUUGGG-G--UGGCUAuUGG- -5'
24444 5' -50.6 NC_005264.1 + 86714 0.66 0.993283
Target:  5'- cGuCGCGCAAGAucugcagACCCCcuCUGAU-GCCg -3'
miRNA:   3'- uC-GUGUGUUCU-------UGGGGu-GGCUAuUGG- -5'
24444 5' -50.6 NC_005264.1 + 82071 0.66 0.995783
Target:  5'- gAGCGCggACAAGAucuuCgCCGCCGAgGAUUg -3'
miRNA:   3'- -UCGUG--UGUUCUu---GgGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 65624 0.66 0.995716
Target:  5'- cGGCuCGUggGuACCCgcgcgcgCACCGGUAACCa -3'
miRNA:   3'- -UCGuGUGuuCuUGGG-------GUGGCUAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 31283 0.66 0.99537
Target:  5'- cGCGCACAugcagaagcguGAGCUUCGCCGAcuggugucccaggugUAACUg -3'
miRNA:   3'- uCGUGUGUu----------CUUGGGGUGGCU---------------AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 132221 0.66 0.995077
Target:  5'- uGCGCGC-GGAuccgucGCCgCCGCCGuc-GCCg -3'
miRNA:   3'- uCGUGUGuUCU------UGG-GGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 7265 0.66 0.99461
Target:  5'- aGGCAgACGuagccuuggcgacggAGAGCCCCGCCagugcguAUGGCUu -3'
miRNA:   3'- -UCGUgUGU---------------UCUUGGGGUGGc------UAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 87212 0.66 0.993379
Target:  5'- cAGCACACAcaagaGGAACUaaaCCACCuucuGAUGgaucccGCCg -3'
miRNA:   3'- -UCGUGUGU-----UCUUGG---GGUGG----CUAU------UGG- -5'
24444 5' -50.6 NC_005264.1 + 13633 0.66 0.993379
Target:  5'- uGGCGCACuacuacGAACCCagcuaACCGcucuGCCu -3'
miRNA:   3'- -UCGUGUGuu----CUUGGGg----UGGCuau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 122228 0.66 0.994278
Target:  5'- gGGCuuauuuCGCAGGAcCCCCugCGuaguuCCa -3'
miRNA:   3'- -UCGu-----GUGUUCUuGGGGugGCuauu-GG- -5'
24444 5' -50.6 NC_005264.1 + 80612 0.66 0.995077
Target:  5'- aAGCAaACGAGAcACUCUACgCGAUGcuggcGCCg -3'
miRNA:   3'- -UCGUgUGUUCU-UGGGGUG-GCUAU-----UGG- -5'
24444 5' -50.6 NC_005264.1 + 45575 0.66 0.993379
Target:  5'- cGGCGCGCAcGAGUCCCuCgGAU-ACCa -3'
miRNA:   3'- -UCGUGUGUuCUUGGGGuGgCUAuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.