miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 80158 1.13 0.00624
Target:  5'- uAGCACACAAGAACCCCACCGAUAACCu -3'
miRNA:   3'- -UCGUGUGUUCUUGGGGUGGCUAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 57000 0.81 0.480041
Target:  5'- gGGCcauGCACGAGAACCguuCCGCCGAU-ACCa -3'
miRNA:   3'- -UCG---UGUGUUCUUGG---GGUGGCUAuUGG- -5'
24444 5' -50.6 NC_005264.1 + 140438 0.8 0.519802
Target:  5'- cGCGCACGAGGAaauCUCCugCGAUAGCg -3'
miRNA:   3'- uCGUGUGUUCUU---GGGGugGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 131144 0.79 0.540167
Target:  5'- cGCGCGCGaccuuuggcgGGcAGCCCCGCCGAgAGCCc -3'
miRNA:   3'- uCGUGUGU----------UC-UUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 12117 0.79 0.540167
Target:  5'- cGCGCGCGaccuuuggcgGGcAGCCCCGCCGAgAGCCc -3'
miRNA:   3'- uCGUGUGU----------UC-UUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 54444 0.79 0.550451
Target:  5'- uGGCGCGgGGGAugCCCACCGccgAGCUg -3'
miRNA:   3'- -UCGUGUgUUCUugGGGUGGCua-UUGG- -5'
24444 5' -50.6 NC_005264.1 + 141087 0.79 0.581632
Target:  5'- cGGCGCuCAAGAcgGCCgCCGCCGAaGGCCc -3'
miRNA:   3'- -UCGUGuGUUCU--UGG-GGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 136659 0.78 0.613159
Target:  5'- gGGCGC-CAAcGGCCCCGCCGAcaguGCCg -3'
miRNA:   3'- -UCGUGuGUUcUUGGGGUGGCUau--UGG- -5'
24444 5' -50.6 NC_005264.1 + 33946 0.77 0.676384
Target:  5'- uGGCGCGCcGGGACCgCGcCCGAUAgggGCCg -3'
miRNA:   3'- -UCGUGUGuUCUUGGgGU-GGCUAU---UGG- -5'
24444 5' -50.6 NC_005264.1 + 152973 0.77 0.676384
Target:  5'- uGGCGCGCcGGGACCgCGcCCGAUAgggGCCg -3'
miRNA:   3'- -UCGUGUGuUCUUGGgGU-GGCUAU---UGG- -5'
24444 5' -50.6 NC_005264.1 + 64184 0.76 0.69725
Target:  5'- cAGCACugggucgaGCAGGAACCCCAcuuCCGAcucGGCCu -3'
miRNA:   3'- -UCGUG--------UGUUCUUGGGGU---GGCUa--UUGG- -5'
24444 5' -50.6 NC_005264.1 + 46309 0.76 0.7076
Target:  5'- uAGCcCcCAAcGACCCCACCGAaGACCg -3'
miRNA:   3'- -UCGuGuGUUcUUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 129008 0.76 0.717883
Target:  5'- cGGCGCGCAGGGgaauagcuacaGCCUUGCCGGcgAGCCg -3'
miRNA:   3'- -UCGUGUGUUCU-----------UGGGGUGGCUa-UUGG- -5'
24444 5' -50.6 NC_005264.1 + 162080 0.76 0.717883
Target:  5'- uGuCGCGUAGGGGCUCCGCCGAaGACCa -3'
miRNA:   3'- uC-GUGUGUUCUUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 23816 0.76 0.738203
Target:  5'- cGCGCGCGAGAACCCUcgggAgCGuUGGCCc -3'
miRNA:   3'- uCGUGUGUUCUUGGGG----UgGCuAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 95316 0.75 0.777584
Target:  5'- cAGCGCAUgGAGAuuGCCgCCGCCGGgcGCCg -3'
miRNA:   3'- -UCGUGUG-UUCU--UGG-GGUGGCUauUGG- -5'
24444 5' -50.6 NC_005264.1 + 148380 0.74 0.805702
Target:  5'- aAGCACGCGAGAGgCUUGCCGccauGCCu -3'
miRNA:   3'- -UCGUGUGUUCUUgGGGUGGCuau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 2389 0.74 0.805702
Target:  5'- cGCcCGCAGGAGCCCggCGCCGGccuGCCu -3'
miRNA:   3'- uCGuGUGUUCUUGGG--GUGGCUau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 145933 0.74 0.805702
Target:  5'- cAGCGCggGCAuGGGCCUCACCGAcGACg -3'
miRNA:   3'- -UCGUG--UGUuCUUGGGGUGGCUaUUGg -5'
24444 5' -50.6 NC_005264.1 + 121416 0.74 0.805702
Target:  5'- cGCcCGCAGGAGCCCggCGCCGGccuGCCu -3'
miRNA:   3'- uCGuGUGUUCUUGGG--GUGGCUau-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.