miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 21391 0.66 0.995783
Target:  5'- uGCGCucagACGAGGuaGCCgCCGgCGAUAGCg -3'
miRNA:   3'- uCGUG----UGUUCU--UGG-GGUgGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 82071 0.66 0.995783
Target:  5'- gAGCGCggACAAGAucuuCgCCGCCGAgGAUUg -3'
miRNA:   3'- -UCGUG--UGUUCUu---GgGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 44538 0.66 0.995783
Target:  5'- cGCGCGCGAGuACaUCACCGAgacgucaaacGCCg -3'
miRNA:   3'- uCGUGUGUUCuUGgGGUGGCUau--------UGG- -5'
24444 5' -50.6 NC_005264.1 + 21372 0.66 0.995783
Target:  5'- cGGC-CGguGGAaagagGCCCCGCCGcucGCCu -3'
miRNA:   3'- -UCGuGUguUCU-----UGGGGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 114893 0.66 0.995783
Target:  5'- gGGCACGCuggaccGggUCUCGCCGuccuCCg -3'
miRNA:   3'- -UCGUGUGuu----CuuGGGGUGGCuauuGG- -5'
24444 5' -50.6 NC_005264.1 + 52608 0.66 0.995783
Target:  5'- uGGCugACAugccuuGGAAUCgUGCCGGUGAUa -3'
miRNA:   3'- -UCGugUGU------UCUUGGgGUGGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 83285 0.66 0.995783
Target:  5'- cGGC-CGCAAG-GCCUUGCCGcgGugCg -3'
miRNA:   3'- -UCGuGUGUUCuUGGGGUGGCuaUugG- -5'
24444 5' -50.6 NC_005264.1 + 74416 0.66 0.995783
Target:  5'- uGGC-UGCGGGAGCCCaugUCGGUGACa -3'
miRNA:   3'- -UCGuGUGUUCUUGGGgu-GGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 65624 0.66 0.995716
Target:  5'- cGGCuCGUggGuACCCgcgcgcgCACCGGUAACCa -3'
miRNA:   3'- -UCGuGUGuuCuUGGG-------GUGGCUAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 31283 0.66 0.99537
Target:  5'- cGCGCACAugcagaagcguGAGCUUCGCCGAcuggugucccaggugUAACUg -3'
miRNA:   3'- uCGUGUGUu----------CUUGGGGUGGCU---------------AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 101388 0.66 0.995077
Target:  5'- cGGCGCuCGAGcAACUCggCGCCGAggagcgGGCCg -3'
miRNA:   3'- -UCGUGuGUUC-UUGGG--GUGGCUa-----UUGG- -5'
24444 5' -50.6 NC_005264.1 + 106319 0.66 0.995077
Target:  5'- cGGCGgGCAGGGcgACCCCuCCacagAGCCc -3'
miRNA:   3'- -UCGUgUGUUCU--UGGGGuGGcua-UUGG- -5'
24444 5' -50.6 NC_005264.1 + 13194 0.66 0.995077
Target:  5'- uGCGCGC-GGAuccgucGCCgCCGCCGuc-GCCg -3'
miRNA:   3'- uCGUGUGuUCU------UGG-GGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 8330 0.66 0.995077
Target:  5'- uGCGCGCGGcauguGcGCCCCGCaGAccuUAACCg -3'
miRNA:   3'- uCGUGUGUU-----CuUGGGGUGgCU---AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 80612 0.66 0.995077
Target:  5'- aAGCAaACGAGAcACUCUACgCGAUGcuggcGCCg -3'
miRNA:   3'- -UCGUgUGUUCU-UGGGGUG-GCUAU-----UGG- -5'
24444 5' -50.6 NC_005264.1 + 40569 0.66 0.995077
Target:  5'- gAGCGacaGCAAGAGCUgaACCGGcAGCUg -3'
miRNA:   3'- -UCGUg--UGUUCUUGGggUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 132319 0.66 0.995077
Target:  5'- cGGCcaaacuGCGCGAGAGCCgCuucCCGcaAUGGCCu -3'
miRNA:   3'- -UCG------UGUGUUCUUGGgGu--GGC--UAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 159596 0.66 0.995077
Target:  5'- gAGCGacaGCAAGAGCUgaACCGGcAGCUg -3'
miRNA:   3'- -UCGUg--UGUUCUUGGggUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 16846 0.66 0.995077
Target:  5'- cGCGCACGccguAGAGgCCC-UCGuUGACCu -3'
miRNA:   3'- uCGUGUGU----UCUUgGGGuGGCuAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 132221 0.66 0.995077
Target:  5'- uGCGCGC-GGAuccgucGCCgCCGCCGuc-GCCg -3'
miRNA:   3'- uCGUGUGuUCU------UGG-GGUGGCuauUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.