miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 590 0.68 0.976849
Target:  5'- cGCcCGCc--AGCCCCGCCG-UAGCCc -3'
miRNA:   3'- uCGuGUGuucUUGGGGUGGCuAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 1143 0.72 0.880111
Target:  5'- gGGCGCACGGGAcgAUCCgGCCGccagucuGCCg -3'
miRNA:   3'- -UCGUGUGUUCU--UGGGgUGGCuau----UGG- -5'
24444 5' -50.6 NC_005264.1 + 1440 0.67 0.992369
Target:  5'- gGGCcucCGCGGGAGCCagCACCGGccaucGCCg -3'
miRNA:   3'- -UCGu--GUGUUCUUGGg-GUGGCUau---UGG- -5'
24444 5' -50.6 NC_005264.1 + 1513 0.68 0.982707
Target:  5'- cGCugGCugcgccguuuuuuGGGGCCCCGCgGcguUGACCg -3'
miRNA:   3'- uCGugUGu------------UCUUGGGGUGgCu--AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 2389 0.74 0.805702
Target:  5'- cGCcCGCAGGAGCCCggCGCCGGccuGCCu -3'
miRNA:   3'- uCGuGUGUUCUUGGG--GUGGCUau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 3135 0.66 0.99402
Target:  5'- cGUACACAugucauccgugggcAGGGCaagaCCACCGAacgcguccuUGGCCu -3'
miRNA:   3'- uCGUGUGU--------------UCUUGg---GGUGGCU---------AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 3201 0.66 0.994278
Target:  5'- gGGCuuauuuCGCAGGAcCCCCugCGuaguuCCa -3'
miRNA:   3'- -UCGu-----GUGUUCUuGGGGugGCuauu-GG- -5'
24444 5' -50.6 NC_005264.1 + 3493 0.68 0.981467
Target:  5'- cGCACGCGgcggggggcagGGGAUCCuCGCCGuccGCCu -3'
miRNA:   3'- uCGUGUGU-----------UCUUGGG-GUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 5596 0.68 0.976849
Target:  5'- cGCGC-CGAGGGCCgCCAC-GAaGACCc -3'
miRNA:   3'- uCGUGuGUUCUUGG-GGUGgCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 6541 0.67 0.992369
Target:  5'- cGCGUACGGGAGaCCCugCGAguucACCg -3'
miRNA:   3'- uCGUGUGUUCUUgGGGugGCUau--UGG- -5'
24444 5' -50.6 NC_005264.1 + 7265 0.66 0.99461
Target:  5'- aGGCAgACGuagccuuggcgacggAGAGCCCCGCCagugcguAUGGCUu -3'
miRNA:   3'- -UCGUgUGU---------------UCUUGGGGUGGc------UAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 8330 0.66 0.995077
Target:  5'- uGCGCGCGGcauguGcGCCCCGCaGAccuUAACCg -3'
miRNA:   3'- uCGUGUGUU-----CuUGGGGUGgCU---AUUGG- -5'
24444 5' -50.6 NC_005264.1 + 9515 0.67 0.98859
Target:  5'- gAGCACACGAacacuGGCCUCACuCGuu-GCCu -3'
miRNA:   3'- -UCGUGUGUUc----UUGGGGUG-GCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 9689 0.68 0.979253
Target:  5'- gAGCAUACGacGGGAUaCCCGUCGGUAGCa -3'
miRNA:   3'- -UCGUGUGU--UCUUG-GGGUGGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 12117 0.79 0.540167
Target:  5'- cGCGCGCGaccuuuggcgGGcAGCCCCGCCGAgAGCCc -3'
miRNA:   3'- uCGUGUGU----------UC-UUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 13194 0.66 0.995077
Target:  5'- uGCGCGC-GGAuccgucGCCgCCGCCGuc-GCCg -3'
miRNA:   3'- uCGUGUGuUCU------UGG-GGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 13421 0.72 0.894231
Target:  5'- cGGCGCGCGAccGCCgCCGCCGA-GACg -3'
miRNA:   3'- -UCGUGUGUUcuUGG-GGUGGCUaUUGg -5'
24444 5' -50.6 NC_005264.1 + 13456 0.68 0.976849
Target:  5'- cGGCGCcgaAGGGGCUCCugCGggGACUc -3'
miRNA:   3'- -UCGUGug-UUCUUGGGGugGCuaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 13633 0.66 0.993379
Target:  5'- uGGCGCACuacuacGAACCCagcuaACCGcucuGCCu -3'
miRNA:   3'- -UCGUGUGuu----CUUGGGg----UGGCuau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 14488 0.7 0.940767
Target:  5'- gAGCAC-CAAGAGCUCC-CCGGc--CCg -3'
miRNA:   3'- -UCGUGuGUUCUUGGGGuGGCUauuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.