miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24444 5' -50.6 NC_005264.1 + 35777 0.71 0.919522
Target:  5'- uGguUGCGAGAGCCCUAcCCGucgAGCCu -3'
miRNA:   3'- uCguGUGUUCUUGGGGU-GGCua-UUGG- -5'
24444 5' -50.6 NC_005264.1 + 98762 0.73 0.865053
Target:  5'- cGCGCGaGAGAACCCacagGCCGA-GACCu -3'
miRNA:   3'- uCGUGUgUUCUUGGGg---UGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 71933 0.73 0.872697
Target:  5'- uGCAgGCAGGAgaucguGCCCCcaacGCCGGUAAUg -3'
miRNA:   3'- uCGUgUGUUCU------UGGGG----UGGCUAUUGg -5'
24444 5' -50.6 NC_005264.1 + 120170 0.72 0.880111
Target:  5'- gGGCGCACGGGAcgAUCCgGCCGccagucuGCCg -3'
miRNA:   3'- -UCGUGUGUUCU--UGGGgUGGCuau----UGG- -5'
24444 5' -50.6 NC_005264.1 + 134122 0.72 0.880111
Target:  5'- cGCAgGCAacuAGAGCCCCAUaagacAUAACCg -3'
miRNA:   3'- uCGUgUGU---UCUUGGGGUGgc---UAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 140532 0.72 0.880111
Target:  5'- cGCGCGCcAGAcuacagcuAUCCUACCGAcGACCc -3'
miRNA:   3'- uCGUGUGuUCU--------UGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 132448 0.72 0.894231
Target:  5'- cGGCGCGCGAccGCCgCCGCCGA-GACg -3'
miRNA:   3'- -UCGUGUGUUcuUGG-GGUGGCUaUUGg -5'
24444 5' -50.6 NC_005264.1 + 20220 0.72 0.907377
Target:  5'- uGGCACGCAuguGGCCCCGCgCG-UGACg -3'
miRNA:   3'- -UCGUGUGUuc-UUGGGGUG-GCuAUUGg -5'
24444 5' -50.6 NC_005264.1 + 55119 0.71 0.918938
Target:  5'- aAGC-CACGAGGguucgacACCCCGCCGugcGCUg -3'
miRNA:   3'- -UCGuGUGUUCU-------UGGGGUGGCuauUGG- -5'
24444 5' -50.6 NC_005264.1 + 116242 0.73 0.857186
Target:  5'- cGGUGC-CGGGAGCUCCGCCG-UGACa -3'
miRNA:   3'- -UCGUGuGUUCUUGGGGUGGCuAUUGg -5'
24444 5' -50.6 NC_005264.1 + 85599 0.73 0.849102
Target:  5'- gGGCAUccugauCAGGAaaGCUCCGCCGAU-GCCg -3'
miRNA:   3'- -UCGUGu-----GUUCU--UGGGGUGGCUAuUGG- -5'
24444 5' -50.6 NC_005264.1 + 148380 0.74 0.805702
Target:  5'- aAGCACGCGAGAGgCUUGCCGccauGCCu -3'
miRNA:   3'- -UCGUGUGUUCUUgGGGUGGCuau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 131144 0.79 0.540167
Target:  5'- cGCGCGCGaccuuuggcgGGcAGCCCCGCCGAgAGCCc -3'
miRNA:   3'- uCGUGUGU----------UC-UUGGGGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 141087 0.79 0.581632
Target:  5'- cGGCGCuCAAGAcgGCCgCCGCCGAaGGCCc -3'
miRNA:   3'- -UCGUGuGUUCU--UGG-GGUGGCUaUUGG- -5'
24444 5' -50.6 NC_005264.1 + 136659 0.78 0.613159
Target:  5'- gGGCGC-CAAcGGCCCCGCCGAcaguGCCg -3'
miRNA:   3'- -UCGUGuGUUcUUGGGGUGGCUau--UGG- -5'
24444 5' -50.6 NC_005264.1 + 152973 0.77 0.676384
Target:  5'- uGGCGCGCcGGGACCgCGcCCGAUAgggGCCg -3'
miRNA:   3'- -UCGUGUGuUCUUGGgGU-GGCUAU---UGG- -5'
24444 5' -50.6 NC_005264.1 + 64184 0.76 0.69725
Target:  5'- cAGCACugggucgaGCAGGAACCCCAcuuCCGAcucGGCCu -3'
miRNA:   3'- -UCGUG--------UGUUCUUGGGGU---GGCUa--UUGG- -5'
24444 5' -50.6 NC_005264.1 + 23816 0.76 0.738203
Target:  5'- cGCGCGCGAGAACCCUcgggAgCGuUGGCCc -3'
miRNA:   3'- uCGUGUGUUCUUGGGG----UgGCuAUUGG- -5'
24444 5' -50.6 NC_005264.1 + 121416 0.74 0.805702
Target:  5'- cGCcCGCAGGAGCCCggCGCCGGccuGCCu -3'
miRNA:   3'- uCGuGUGUUCUUGGG--GUGGCUau-UGG- -5'
24444 5' -50.6 NC_005264.1 + 145933 0.74 0.805702
Target:  5'- cAGCGCggGCAuGGGCCUCACCGAcGACg -3'
miRNA:   3'- -UCGUG--UGUuCUUGGGGUGGCUaUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.