miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 162428 0.66 0.846311
Target:  5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3'
miRNA:   3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 43401 0.66 0.846311
Target:  5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3'
miRNA:   3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 6486 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 125513 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 103023 0.66 0.83514
Target:  5'- uGGUGCGGCGCua--CCGGcaagcaUGGuGCg -3'
miRNA:   3'- uCCGCGCCGUGuagaGGCCa-----ACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 74105 0.66 0.826947
Target:  5'- uGGCGCGGUcgACGcUgUCgCGGcUGGGGUc -3'
miRNA:   3'- uCCGCGCCG--UGU-AgAG-GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 98936 0.66 0.818583
Target:  5'- cGGCacgGCGGCAacUUUCa-GUUGGAGCu -3'
miRNA:   3'- uCCG---CGCCGUguAGAGgcCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 27997 0.66 0.818583
Target:  5'- uAGcCGCGGCcCAUCgauccaggUCGGUcgGGGGCg -3'
miRNA:   3'- -UCcGCGCCGuGUAGa-------GGCCAa-CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 48401 0.66 0.818583
Target:  5'- cGGGCgGCGGC-CAggagCgGGUgGGGGCa -3'
miRNA:   3'- -UCCG-CGCCGuGUaga-GgCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 71514 0.66 0.810057
Target:  5'- aAGGcCGCGGUGCGcCUCgacUUGGAGCu -3'
miRNA:   3'- -UCC-GCGCCGUGUaGAGgccAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 66508 0.67 0.793436
Target:  5'- uGGCGCGGUACAgcgagCgugcccugacgacgaCCGcGUUGcGGGCg -3'
miRNA:   3'- uCCGCGCCGUGUa----Ga--------------GGC-CAAC-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 30395 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 12439 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 149881 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 131466 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 149422 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 60857 0.67 0.78808
Target:  5'- cGGCGCGuGCGCggcaaaguuuucuaGUCUCuCGGcguacgccgcggUGGGGCc -3'
miRNA:   3'- uCCGCGC-CGUG--------------UAGAG-GCCa-----------ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 84475 0.67 0.77448
Target:  5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3'
miRNA:   3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.