miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 50874 0.67 0.765259
Target:  5'- -cGCGaacaGGCGCGUCcaUCCGGgcgcUUGGAGg -3'
miRNA:   3'- ucCGCg---CCGUGUAG--AGGCC----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 84475 0.67 0.77448
Target:  5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3'
miRNA:   3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 36340 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 146633 0.68 0.70785
Target:  5'- -aGCGCGGCGCGUCccccguugUCCGGUa-GAcGCa -3'
miRNA:   3'- ucCGCGCCGUGUAG--------AGGCCAacCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 42954 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 35529 0.68 0.727326
Target:  5'- uGGGCGCGGCGaaacCUauaGGgcguagUGGGGCa -3'
miRNA:   3'- -UCCGCGCCGUgua-GAgg-CCa-----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 58505 0.68 0.70785
Target:  5'- aAGaGCGCGGUGCGUCcucggaugCCGgGUUGGAu- -3'
miRNA:   3'- -UC-CGCGCCGUGUAGa-------GGC-CAACCUcg -5'
24445 5' -58.4 NC_005264.1 + 47210 0.68 0.70785
Target:  5'- gGGGCcaCGGC-CGUCgauggCUGGUcGGAGCu -3'
miRNA:   3'- -UCCGc-GCCGuGUAGa----GGCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 8384 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 116600 0.68 0.70785
Target:  5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3'
miRNA:   3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5'
24445 5' -58.4 NC_005264.1 + 80345 0.68 0.698016
Target:  5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3'
miRNA:   3'- ucCGCGCCguGUagaGGCCAACCUCg -5'
24445 5' -58.4 NC_005264.1 + 127411 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 94626 0.68 0.727326
Target:  5'- cGGCGUGGaCGCGcuguUUUCCGuccccaUGGAGCa -3'
miRNA:   3'- uCCGCGCC-GUGU----AGAGGCca----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 161981 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 107207 0.69 0.638185
Target:  5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3'
miRNA:   3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5'
24445 5' -58.4 NC_005264.1 + 124985 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 159572 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 157229 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.