miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 80013 1.12 0.001173
Target:  5'- gAGGCGCGGCACAUCUCCGGUUGGAGCg -3'
miRNA:   3'- -UCCGCGCCGUGUAGAGGCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 117511 0.79 0.196605
Target:  5'- cGGGCGCGGCGCGUCUgCGGUcgcuccccuaauccUGGcGUc -3'
miRNA:   3'- -UCCGCGCCGUGUAGAgGCCA--------------ACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 76734 0.75 0.331137
Target:  5'- uGGuGCGCGGCGCAUCUUCGccgucUUGGGGa -3'
miRNA:   3'- -UC-CGCGCCGUGUAGAGGCc----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 149535 0.74 0.393615
Target:  5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3'
miRNA:   3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30508 0.74 0.393615
Target:  5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3'
miRNA:   3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 83872 0.73 0.410386
Target:  5'- cGGCGCGGCACcacaaCUCguauguugCGG-UGGAGCg -3'
miRNA:   3'- uCCGCGCCGUGua---GAG--------GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 21552 0.72 0.472403
Target:  5'- uGGGCGaCGGCACuggg--GGUUGGGGCa -3'
miRNA:   3'- -UCCGC-GCCGUGuagaggCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 2887 0.71 0.519462
Target:  5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3'
miRNA:   3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5'
24445 5' -58.4 NC_005264.1 + 121913 0.71 0.519462
Target:  5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3'
miRNA:   3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5'
24445 5' -58.4 NC_005264.1 + 92969 0.71 0.529102
Target:  5'- uGGGCGCGaaGCGCGUCcgCCGua-GGGGCg -3'
miRNA:   3'- -UCCGCGC--CGUGUAGa-GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 16627 0.71 0.568258
Target:  5'- cGGCGaucgacacguCGaGUGCGUCUCUGGUgcGGAGCg -3'
miRNA:   3'- uCCGC----------GC-CGUGUAGAGGCCAa-CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 56159 0.7 0.588118
Target:  5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3'
miRNA:   3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 82364 0.7 0.608101
Target:  5'- cAGGCa-GGCGCGUCgaUCCGGUgccGGGCg -3'
miRNA:   3'- -UCCGcgCCGUGUAG--AGGCCAac-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 19967 0.7 0.609102
Target:  5'- aAGGCGCGGCGCgagucgacgcaacaAaccgaccgcgcucgcUCgcaUCCGGUUGGcGCg -3'
miRNA:   3'- -UCCGCGCCGUG--------------U---------------AG---AGGCCAACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 136034 0.7 0.628152
Target:  5'- cGGCGCGGCcCAcuUCUCCucgUGGaAGCc -3'
miRNA:   3'- uCCGCGCCGuGU--AGAGGccaACC-UCG- -5'
24445 5' -58.4 NC_005264.1 + 107207 0.69 0.638185
Target:  5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3'
miRNA:   3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5'
24445 5' -58.4 NC_005264.1 + 3376 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 39813 0.69 0.638185
Target:  5'- -uGCGCGGCACGcaUCCGccuagaUGGAGCc -3'
miRNA:   3'- ucCGCGCCGUGUagAGGCca----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 122403 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 79230 0.69 0.638185
Target:  5'- cAGGCgGCGGCGggggUGUCUuuGGgguuuacguuaUUGGAGCu -3'
miRNA:   3'- -UCCG-CGCCGU----GUAGAggCC-----------AACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.