Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24445 | 5' | -58.4 | NC_005264.1 | + | 38202 | 0.69 | 0.668228 |
Target: 5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3' miRNA: 3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 40545 | 0.69 | 0.668228 |
Target: 5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3' miRNA: 3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 159572 | 0.69 | 0.668228 |
Target: 5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3' miRNA: 3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 157229 | 0.69 | 0.668228 |
Target: 5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3' miRNA: 3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 124985 | 0.69 | 0.678196 |
Target: 5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3' miRNA: 3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 5959 | 0.69 | 0.678196 |
Target: 5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3' miRNA: 3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 136358 | 0.69 | 0.682174 |
Target: 5'- cGGGCGCugGGCGCug--CCGGcgcgaauagcgcugUGGAGCg -3' miRNA: 3'- -UCCGCG--CCGUGuagaGGCCa-------------ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 22005 | 0.69 | 0.688129 |
Target: 5'- aAGGCGCGGCGCGUa---GGUUuuuugcccGcGAGCg -3' miRNA: 3'- -UCCGCGCCGUGUAgaggCCAA--------C-CUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 80345 | 0.68 | 0.698016 |
Target: 5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3' miRNA: 3'- ucCGCGCCguGUagaGGCCAACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 58505 | 0.68 | 0.70785 |
Target: 5'- aAGaGCGCGGUGCGUCcucggaugCCGgGUUGGAu- -3' miRNA: 3'- -UC-CGCGCCGUGUAGa-------GGC-CAACCUcg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 47210 | 0.68 | 0.70785 |
Target: 5'- gGGGCcaCGGC-CGUCgauggCUGGUcGGAGCu -3' miRNA: 3'- -UCCGc-GCCGuGUAGa----GGCCAaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 146633 | 0.68 | 0.70785 |
Target: 5'- -aGCGCGGCGCGUCccccguugUCCGGUa-GAcGCa -3' miRNA: 3'- ucCGCGCCGUGUAG--------AGGCCAacCU-CG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 116600 | 0.68 | 0.70785 |
Target: 5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3' miRNA: 3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 35529 | 0.68 | 0.727326 |
Target: 5'- uGGGCGCGGCGaaacCUauaGGgcguagUGGGGCa -3' miRNA: 3'- -UCCGCGCCGUgua-GAgg-CCa-----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 94626 | 0.68 | 0.727326 |
Target: 5'- cGGCGUGGaCGCGcuguUUUCCGuccccaUGGAGCa -3' miRNA: 3'- uCCGCGCC-GUGU----AGAGGCca----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 8384 | 0.68 | 0.727326 |
Target: 5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3' miRNA: 3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 127411 | 0.68 | 0.727326 |
Target: 5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3' miRNA: 3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 42954 | 0.68 | 0.73695 |
Target: 5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3' miRNA: 3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 161981 | 0.68 | 0.73695 |
Target: 5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3' miRNA: 3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 46464 | 0.67 | 0.755925 |
Target: 5'- -uGCGCGGCGC-UCUuuGccugUGGAGUc -3' miRNA: 3'- ucCGCGCCGUGuAGAggCca--ACCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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