miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 2887 0.71 0.519462
Target:  5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3'
miRNA:   3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5'
24445 5' -58.4 NC_005264.1 + 3376 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 5959 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 6486 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 8384 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 12439 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 16627 0.71 0.568258
Target:  5'- cGGCGaucgacacguCGaGUGCGUCUCUGGUgcGGAGCg -3'
miRNA:   3'- uCCGC----------GC-CGUGUAGAGGCCAa-CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 19967 0.7 0.609102
Target:  5'- aAGGCGCGGCGCgagucgacgcaacaAaccgaccgcgcucgcUCgcaUCCGGUUGGcGCg -3'
miRNA:   3'- -UCCGCGCCGUG--------------U---------------AG---AGGCCAACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 21552 0.72 0.472403
Target:  5'- uGGGCGaCGGCACuggg--GGUUGGGGCa -3'
miRNA:   3'- -UCCGC-GCCGUGuagaggCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 22005 0.69 0.688129
Target:  5'- aAGGCGCGGCGCGUa---GGUUuuuugcccGcGAGCg -3'
miRNA:   3'- -UCCGCGCCGUGUAgaggCCAA--------C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 27997 0.66 0.818583
Target:  5'- uAGcCGCGGCcCAUCgauccaggUCGGUcgGGGGCg -3'
miRNA:   3'- -UCcGCGCCGuGUAGa-------GGCCAa-CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30395 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 30508 0.74 0.393615
Target:  5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3'
miRNA:   3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 35529 0.68 0.727326
Target:  5'- uGGGCGCGGCGaaacCUauaGGgcguagUGGGGCa -3'
miRNA:   3'- -UCCGCGCCGUgua-GAgg-CCa-----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 36340 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 38202 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 39813 0.69 0.638185
Target:  5'- -uGCGCGGCACGcaUCCGccuagaUGGAGCc -3'
miRNA:   3'- ucCGCGCCGUGUagAGGCca----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 40545 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 42954 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.