miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 43401 0.66 0.846311
Target:  5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3'
miRNA:   3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 46464 0.67 0.755925
Target:  5'- -uGCGCGGCGC-UCUuuGccugUGGAGUc -3'
miRNA:   3'- ucCGCGCCGUGuAGAggCca--ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 47210 0.68 0.70785
Target:  5'- gGGGCcaCGGC-CGUCgauggCUGGUcGGAGCu -3'
miRNA:   3'- -UCCGc-GCCGuGUAGa----GGCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 48401 0.66 0.818583
Target:  5'- cGGGCgGCGGC-CAggagCgGGUgGGGGCa -3'
miRNA:   3'- -UCCG-CGCCGuGUaga-GgCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 50874 0.67 0.765259
Target:  5'- -cGCGaacaGGCGCGUCcaUCCGGgcgcUUGGAGg -3'
miRNA:   3'- ucCGCg---CCGUGUAG--AGGCC----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 56159 0.7 0.588118
Target:  5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3'
miRNA:   3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 58505 0.68 0.70785
Target:  5'- aAGaGCGCGGUGCGUCcucggaugCCGgGUUGGAu- -3'
miRNA:   3'- -UC-CGCGCCGUGUAGa-------GGC-CAACCUcg -5'
24445 5' -58.4 NC_005264.1 + 60857 0.67 0.78808
Target:  5'- cGGCGCGuGCGCggcaaaguuuucuaGUCUCuCGGcguacgccgcggUGGGGCc -3'
miRNA:   3'- uCCGCGC-CGUG--------------UAGAG-GCCa-----------ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 66508 0.67 0.793436
Target:  5'- uGGCGCGGUACAgcgagCgugcccugacgacgaCCGcGUUGcGGGCg -3'
miRNA:   3'- uCCGCGCCGUGUa----Ga--------------GGC-CAAC-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 71514 0.66 0.810057
Target:  5'- aAGGcCGCGGUGCGcCUCgacUUGGAGCu -3'
miRNA:   3'- -UCC-GCGCCGUGUaGAGgccAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 74105 0.66 0.826947
Target:  5'- uGGCGCGGUcgACGcUgUCgCGGcUGGGGUc -3'
miRNA:   3'- uCCGCGCCG--UGU-AgAG-GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 76734 0.75 0.331137
Target:  5'- uGGuGCGCGGCGCAUCUUCGccgucUUGGGGa -3'
miRNA:   3'- -UC-CGCGCCGUGUAGAGGCc----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 79230 0.69 0.638185
Target:  5'- cAGGCgGCGGCGggggUGUCUuuGGgguuuacguuaUUGGAGCu -3'
miRNA:   3'- -UCCG-CGCCGU----GUAGAggCC-----------AACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 80013 1.12 0.001173
Target:  5'- gAGGCGCGGCACAUCUCCGGUUGGAGCg -3'
miRNA:   3'- -UCCGCGCCGUGUAGAGGCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 80345 0.68 0.698016
Target:  5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3'
miRNA:   3'- ucCGCGCCguGUagaGGCCAACCUCg -5'
24445 5' -58.4 NC_005264.1 + 82364 0.7 0.608101
Target:  5'- cAGGCa-GGCGCGUCgaUCCGGUgccGGGCg -3'
miRNA:   3'- -UCCGcgCCGUGUAG--AGGCCAac-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 83872 0.73 0.410386
Target:  5'- cGGCGCGGCACcacaaCUCguauguugCGG-UGGAGCg -3'
miRNA:   3'- uCCGCGCCGUGua---GAG--------GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 84475 0.67 0.77448
Target:  5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3'
miRNA:   3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 92969 0.71 0.529102
Target:  5'- uGGGCGCGaaGCGCGUCcgCCGua-GGGGCg -3'
miRNA:   3'- -UCCGCGC--CGUGUAGa-GGCcaaCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.