Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24445 | 5' | -58.4 | NC_005264.1 | + | 93344 | 0.67 | 0.755925 |
Target: 5'- cGGCGUGGCACGcguguauggauaUgUgCGGcgaaUGGGGCg -3' miRNA: 3'- uCCGCGCCGUGU------------AgAgGCCa---ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 94626 | 0.68 | 0.727326 |
Target: 5'- cGGCGUGGaCGCGcuguUUUCCGuccccaUGGAGCa -3' miRNA: 3'- uCCGCGCC-GUGU----AGAGGCca----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 98936 | 0.66 | 0.818583 |
Target: 5'- cGGCacgGCGGCAacUUUCa-GUUGGAGCu -3' miRNA: 3'- uCCG---CGCCGUguAGAGgcCAACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 103023 | 0.66 | 0.83514 |
Target: 5'- uGGUGCGGCGCua--CCGGcaagcaUGGuGCg -3' miRNA: 3'- uCCGCGCCGUGuagaGGCCa-----ACCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 107207 | 0.69 | 0.638185 |
Target: 5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3' miRNA: 3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 116600 | 0.68 | 0.70785 |
Target: 5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3' miRNA: 3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 117511 | 0.79 | 0.196605 |
Target: 5'- cGGGCGCGGCGCGUCUgCGGUcgcuccccuaauccUGGcGUc -3' miRNA: 3'- -UCCGCGCCGUGUAGAgGCCA--------------ACCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 121913 | 0.71 | 0.519462 |
Target: 5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3' miRNA: 3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 122403 | 0.69 | 0.638185 |
Target: 5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3' miRNA: 3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 124985 | 0.69 | 0.678196 |
Target: 5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3' miRNA: 3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 125513 | 0.66 | 0.83514 |
Target: 5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3' miRNA: 3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 127411 | 0.68 | 0.727326 |
Target: 5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3' miRNA: 3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 131466 | 0.67 | 0.792547 |
Target: 5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3' miRNA: 3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 136034 | 0.7 | 0.628152 |
Target: 5'- cGGCGCGGCcCAcuUCUCCucgUGGaAGCc -3' miRNA: 3'- uCCGCGCCGuGU--AGAGGccaACC-UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 136358 | 0.69 | 0.682174 |
Target: 5'- cGGGCGCugGGCGCug--CCGGcgcgaauagcgcugUGGAGCg -3' miRNA: 3'- -UCCGCG--CCGUGuagaGGCCa-------------ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 146633 | 0.68 | 0.70785 |
Target: 5'- -aGCGCGGCGCGUCccccguugUCCGGUa-GAcGCa -3' miRNA: 3'- ucCGCGCCGUGUAG--------AGGCCAacCU-CG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 149422 | 0.67 | 0.792547 |
Target: 5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3' miRNA: 3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 149535 | 0.74 | 0.393615 |
Target: 5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3' miRNA: 3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 149881 | 0.67 | 0.792547 |
Target: 5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3' miRNA: 3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 155367 | 0.67 | 0.765259 |
Target: 5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3' miRNA: 3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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