Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24445 | 5' | -58.4 | NC_005264.1 | + | 157229 | 0.69 | 0.668228 |
Target: 5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3' miRNA: 3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 159572 | 0.69 | 0.668228 |
Target: 5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3' miRNA: 3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 161981 | 0.68 | 0.73695 |
Target: 5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3' miRNA: 3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 162428 | 0.66 | 0.846311 |
Target: 5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3' miRNA: 3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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