miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 162428 0.66 0.846311
Target:  5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3'
miRNA:   3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 161981 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 159572 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 157229 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 155367 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 149881 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 149535 0.74 0.393615
Target:  5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3'
miRNA:   3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 149422 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 146633 0.68 0.70785
Target:  5'- -aGCGCGGCGCGUCccccguugUCCGGUa-GAcGCa -3'
miRNA:   3'- ucCGCGCCGUGUAG--------AGGCCAacCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 136358 0.69 0.682174
Target:  5'- cGGGCGCugGGCGCug--CCGGcgcgaauagcgcugUGGAGCg -3'
miRNA:   3'- -UCCGCG--CCGUGuagaGGCCa-------------ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 136034 0.7 0.628152
Target:  5'- cGGCGCGGCcCAcuUCUCCucgUGGaAGCc -3'
miRNA:   3'- uCCGCGCCGuGU--AGAGGccaACC-UCG- -5'
24445 5' -58.4 NC_005264.1 + 131466 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 127411 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 125513 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 124985 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 122403 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 121913 0.71 0.519462
Target:  5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3'
miRNA:   3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5'
24445 5' -58.4 NC_005264.1 + 117511 0.79 0.196605
Target:  5'- cGGGCGCGGCGCGUCUgCGGUcgcuccccuaauccUGGcGUc -3'
miRNA:   3'- -UCCGCGCCGUGUAGAgGCCA--------------ACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 116600 0.68 0.70785
Target:  5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3'
miRNA:   3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5'
24445 5' -58.4 NC_005264.1 + 107207 0.69 0.638185
Target:  5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3'
miRNA:   3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.