Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24445 | 5' | -58.4 | NC_005264.1 | + | 103023 | 0.66 | 0.83514 |
Target: 5'- uGGUGCGGCGCua--CCGGcaagcaUGGuGCg -3' miRNA: 3'- uCCGCGCCGUGuagaGGCCa-----ACCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 98936 | 0.66 | 0.818583 |
Target: 5'- cGGCacgGCGGCAacUUUCa-GUUGGAGCu -3' miRNA: 3'- uCCG---CGCCGUguAGAGgcCAACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 94626 | 0.68 | 0.727326 |
Target: 5'- cGGCGUGGaCGCGcuguUUUCCGuccccaUGGAGCa -3' miRNA: 3'- uCCGCGCC-GUGU----AGAGGCca----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 93344 | 0.67 | 0.755925 |
Target: 5'- cGGCGUGGCACGcguguauggauaUgUgCGGcgaaUGGGGCg -3' miRNA: 3'- uCCGCGCCGUGU------------AgAgGCCa---ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 92969 | 0.71 | 0.529102 |
Target: 5'- uGGGCGCGaaGCGCGUCcgCCGua-GGGGCg -3' miRNA: 3'- -UCCGCGC--CGUGUAGa-GGCcaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 84475 | 0.67 | 0.77448 |
Target: 5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3' miRNA: 3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 83872 | 0.73 | 0.410386 |
Target: 5'- cGGCGCGGCACcacaaCUCguauguugCGG-UGGAGCg -3' miRNA: 3'- uCCGCGCCGUGua---GAG--------GCCaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 82364 | 0.7 | 0.608101 |
Target: 5'- cAGGCa-GGCGCGUCgaUCCGGUgccGGGCg -3' miRNA: 3'- -UCCGcgCCGUGUAG--AGGCCAac-CUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 80345 | 0.68 | 0.698016 |
Target: 5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3' miRNA: 3'- ucCGCGCCguGUagaGGCCAACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 80013 | 1.12 | 0.001173 |
Target: 5'- gAGGCGCGGCACAUCUCCGGUUGGAGCg -3' miRNA: 3'- -UCCGCGCCGUGUAGAGGCCAACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 79230 | 0.69 | 0.638185 |
Target: 5'- cAGGCgGCGGCGggggUGUCUuuGGgguuuacguuaUUGGAGCu -3' miRNA: 3'- -UCCG-CGCCGU----GUAGAggCC-----------AACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 76734 | 0.75 | 0.331137 |
Target: 5'- uGGuGCGCGGCGCAUCUUCGccgucUUGGGGa -3' miRNA: 3'- -UC-CGCGCCGUGUAGAGGCc----AACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 74105 | 0.66 | 0.826947 |
Target: 5'- uGGCGCGGUcgACGcUgUCgCGGcUGGGGUc -3' miRNA: 3'- uCCGCGCCG--UGU-AgAG-GCCaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 71514 | 0.66 | 0.810057 |
Target: 5'- aAGGcCGCGGUGCGcCUCgacUUGGAGCu -3' miRNA: 3'- -UCC-GCGCCGUGUaGAGgccAACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 66508 | 0.67 | 0.793436 |
Target: 5'- uGGCGCGGUACAgcgagCgugcccugacgacgaCCGcGUUGcGGGCg -3' miRNA: 3'- uCCGCGCCGUGUa----Ga--------------GGC-CAAC-CUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 60857 | 0.67 | 0.78808 |
Target: 5'- cGGCGCGuGCGCggcaaaguuuucuaGUCUCuCGGcguacgccgcggUGGGGCc -3' miRNA: 3'- uCCGCGC-CGUG--------------UAGAG-GCCa-----------ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 58505 | 0.68 | 0.70785 |
Target: 5'- aAGaGCGCGGUGCGUCcucggaugCCGgGUUGGAu- -3' miRNA: 3'- -UC-CGCGCCGUGUAGa-------GGC-CAACCUcg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 57135 | 0.67 | 0.782674 |
Target: 5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3' miRNA: 3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 56159 | 0.7 | 0.588118 |
Target: 5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3' miRNA: 3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 50874 | 0.67 | 0.765259 |
Target: 5'- -cGCGaacaGGCGCGUCcaUCCGGgcgcUUGGAGg -3' miRNA: 3'- ucCGCg---CCGUGUAG--AGGCC----AACCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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