Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24445 | 5' | -58.4 | NC_005264.1 | + | 35529 | 0.68 | 0.727326 |
Target: 5'- uGGGCGCGGCGaaacCUauaGGgcguagUGGGGCa -3' miRNA: 3'- -UCCGCGCCGUgua-GAgg-CCa-----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 157229 | 0.69 | 0.668228 |
Target: 5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3' miRNA: 3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 159572 | 0.69 | 0.668228 |
Target: 5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3' miRNA: 3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 124985 | 0.69 | 0.678196 |
Target: 5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3' miRNA: 3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 136358 | 0.69 | 0.682174 |
Target: 5'- cGGGCGCugGGCGCug--CCGGcgcgaauagcgcugUGGAGCg -3' miRNA: 3'- -UCCGCG--CCGUGuagaGGCCa-------------ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 22005 | 0.69 | 0.688129 |
Target: 5'- aAGGCGCGGCGCGUa---GGUUuuuugcccGcGAGCg -3' miRNA: 3'- -UCCGCGCCGUGUAgaggCCAA--------C-CUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 80345 | 0.68 | 0.698016 |
Target: 5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3' miRNA: 3'- ucCGCGCCguGUagaGGCCAACCUCg -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 47210 | 0.68 | 0.70785 |
Target: 5'- gGGGCcaCGGC-CGUCgauggCUGGUcGGAGCu -3' miRNA: 3'- -UCCGc-GCCGuGUAGa----GGCCAaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 116600 | 0.68 | 0.70785 |
Target: 5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3' miRNA: 3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 107207 | 0.69 | 0.638185 |
Target: 5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3' miRNA: 3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 79230 | 0.69 | 0.638185 |
Target: 5'- cAGGCgGCGGCGggggUGUCUuuGGgguuuacguuaUUGGAGCu -3' miRNA: 3'- -UCCG-CGCCGU----GUAGAggCC-----------AACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 39813 | 0.69 | 0.638185 |
Target: 5'- -uGCGCGGCACGcaUCCGccuagaUGGAGCc -3' miRNA: 3'- ucCGCGCCGUGUagAGGCca----ACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 149535 | 0.74 | 0.393615 |
Target: 5'- -cGCGCGGC-CGUcCUCCGG--GGAGCu -3' miRNA: 3'- ucCGCGCCGuGUA-GAGGCCaaCCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 83872 | 0.73 | 0.410386 |
Target: 5'- cGGCGCGGCACcacaaCUCguauguugCGG-UGGAGCg -3' miRNA: 3'- uCCGCGCCGUGua---GAG--------GCCaACCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 121913 | 0.71 | 0.519462 |
Target: 5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3' miRNA: 3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 16627 | 0.71 | 0.568258 |
Target: 5'- cGGCGaucgacacguCGaGUGCGUCUCUGGUgcGGAGCg -3' miRNA: 3'- uCCGC----------GC-CGUGUAGAGGCCAa-CCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 56159 | 0.7 | 0.588118 |
Target: 5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3' miRNA: 3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 19967 | 0.7 | 0.609102 |
Target: 5'- aAGGCGCGGCGCgagucgacgcaacaAaccgaccgcgcucgcUCgcaUCCGGUUGGcGCg -3' miRNA: 3'- -UCCGCGCCGUG--------------U---------------AG---AGGCCAACCuCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 136034 | 0.7 | 0.628152 |
Target: 5'- cGGCGCGGCcCAcuUCUCCucgUGGaAGCc -3' miRNA: 3'- uCCGCGCCGuGU--AGAGGccaACC-UCG- -5' |
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24445 | 5' | -58.4 | NC_005264.1 | + | 122403 | 0.69 | 0.638185 |
Target: 5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3' miRNA: 3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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