miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 5959 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 40545 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 38202 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 3376 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 82364 0.7 0.608101
Target:  5'- cAGGCa-GGCGCGUCgaUCCGGUgccGGGCg -3'
miRNA:   3'- -UCCGcgCCGUGUAG--AGGCCAac-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 92969 0.71 0.529102
Target:  5'- uGGGCGCGaaGCGCGUCcgCCGua-GGGGCg -3'
miRNA:   3'- -UCCGCGC--CGUGUAGa-GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 2887 0.71 0.519462
Target:  5'- gGGGCGCGGCGCGg--CgGGgaGG-GCg -3'
miRNA:   3'- -UCCGCGCCGUGUagaGgCCaaCCuCG- -5'
24445 5' -58.4 NC_005264.1 + 21552 0.72 0.472403
Target:  5'- uGGGCGaCGGCACuggg--GGUUGGGGCa -3'
miRNA:   3'- -UCCGC-GCCGUGuagaggCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 94626 0.68 0.727326
Target:  5'- cGGCGUGGaCGCGcuguUUUCCGuccccaUGGAGCa -3'
miRNA:   3'- uCCGCGCC-GUGU----AGAGGCca----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 42954 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 6486 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 74105 0.66 0.826947
Target:  5'- uGGCGCGGUcgACGcUgUCgCGGcUGGGGUc -3'
miRNA:   3'- uCCGCGCCG--UGU-AgAG-GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 48401 0.66 0.818583
Target:  5'- cGGGCgGCGGC-CAggagCgGGUgGGGGCa -3'
miRNA:   3'- -UCCG-CGCCGuGUaga-GgCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30395 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 12439 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 50874 0.67 0.765259
Target:  5'- -cGCGaacaGGCGCGUCcaUCCGGgcgcUUGGAGg -3'
miRNA:   3'- ucCGCg---CCGUGUAG--AGGCC----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 36340 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 93344 0.67 0.755925
Target:  5'- cGGCGUGGCACGcguguauggauaUgUgCGGcgaaUGGGGCg -3'
miRNA:   3'- uCCGCGCCGUGU------------AgAgGCCa---ACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.