miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 43401 0.66 0.846311
Target:  5'- gGGGCGCGaaGCcuACGUCUCUGGUaguccgcaacuccaGGAcGCg -3'
miRNA:   3'- -UCCGCGC--CG--UGUAGAGGCCAa-------------CCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 40545 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 3376 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 80013 1.12 0.001173
Target:  5'- gAGGCGCGGCACAUCUCCGGUUGGAGCg -3'
miRNA:   3'- -UCCGCGCCGUGUAGAGGCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30395 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 12439 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 50874 0.67 0.765259
Target:  5'- -cGCGaacaGGCGCGUCcaUCCGGgcgcUUGGAGg -3'
miRNA:   3'- ucCGCg---CCGUGUAG--AGGCC----AACCUCg -5'
24445 5' -58.4 NC_005264.1 + 42954 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 5959 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 8384 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 93344 0.67 0.755925
Target:  5'- cGGCGUGGCACGcguguauggauaUgUgCGGcgaaUGGGGCg -3'
miRNA:   3'- uCCGCGCCGUGU------------AgAgGCCa---ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 6486 0.66 0.83514
Target:  5'- gGGuGCGCGGC-CAUCgagggCCGGU---AGCc -3'
miRNA:   3'- -UC-CGCGCCGuGUAGa----GGCCAaccUCG- -5'
24445 5' -58.4 NC_005264.1 + 146633 0.68 0.70785
Target:  5'- -aGCGCGGCGCGUCccccguugUCCGGUa-GAcGCa -3'
miRNA:   3'- ucCGCGCCGUGUAG--------AGGCCAacCU-CG- -5'
24445 5' -58.4 NC_005264.1 + 74105 0.66 0.826947
Target:  5'- uGGCGCGGUcgACGcUgUCgCGGcUGGGGUc -3'
miRNA:   3'- uCCGCGCCG--UGU-AgAG-GCCaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 36340 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 58505 0.68 0.70785
Target:  5'- aAGaGCGCGGUGCGUCcucggaugCCGgGUUGGAu- -3'
miRNA:   3'- -UC-CGCGCCGUGUAGa-------GGC-CAACCUcg -5'
24445 5' -58.4 NC_005264.1 + 38202 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 48401 0.66 0.818583
Target:  5'- cGGGCgGCGGC-CAggagCgGGUgGGGGCa -3'
miRNA:   3'- -UCCG-CGCCGuGUaga-GgCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.