miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 57135 0.67 0.782674
Target:  5'- uGGGCGCggacguaGGCugGUCUgucuuugcgCCGGcgGGAGa -3'
miRNA:   3'- -UCCGCG-------CCGugUAGA---------GGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 21552 0.72 0.472403
Target:  5'- uGGGCGaCGGCACuggg--GGUUGGGGCa -3'
miRNA:   3'- -UCCGC-GCCGUGuagaggCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 3376 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 30855 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 80013 1.12 0.001173
Target:  5'- gAGGCGCGGCACAUCUCCGGUUGGAGCg -3'
miRNA:   3'- -UCCGCGCCGUGUAGAGGCCAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 12439 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 30395 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 19967 0.7 0.609102
Target:  5'- aAGGCGCGGCGCgagucgacgcaacaAaccgaccgcgcucgcUCgcaUCCGGUUGGcGCg -3'
miRNA:   3'- -UCCGCGCCGUG--------------U---------------AG---AGGCCAACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 149422 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 131466 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 124985 0.69 0.678196
Target:  5'- aGGGCaGCGGCGCAUUcgCGGaugGGAGa -3'
miRNA:   3'- -UCCG-CGCCGUGUAGagGCCaa-CCUCg -5'
24445 5' -58.4 NC_005264.1 + 159572 0.69 0.668228
Target:  5'- aGGGaCGUGGCGCugcggCUCC---UGGAGCg -3'
miRNA:   3'- -UCC-GCGCCGUGua---GAGGccaACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 157229 0.69 0.668228
Target:  5'- -cGCGCGGCccgauaGCggCUCCGGUcgccgaucUGGAGg -3'
miRNA:   3'- ucCGCGCCG------UGuaGAGGCCA--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 107207 0.69 0.638185
Target:  5'- aAGGCgGCGGCGCG-Cg-CGGUUGGcauucGGCg -3'
miRNA:   3'- -UCCG-CGCCGUGUaGagGCCAACC-----UCG- -5'
24445 5' -58.4 NC_005264.1 + 56159 0.7 0.588118
Target:  5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3'
miRNA:   3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 46464 0.67 0.755925
Target:  5'- -uGCGCGGCGC-UCUuuGccugUGGAGUc -3'
miRNA:   3'- ucCGCGCCGUGuAGAggCca--ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 155367 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 84475 0.67 0.77448
Target:  5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3'
miRNA:   3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 60857 0.67 0.78808
Target:  5'- cGGCGCGuGCGCggcaaaguuuucuaGUCUCuCGGcguacgccgcggUGGGGCc -3'
miRNA:   3'- uCCGCGC-CGUG--------------UAGAG-GCCa-----------ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 149881 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.