miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24445 5' -58.4 NC_005264.1 + 79230 0.69 0.638185
Target:  5'- cAGGCgGCGGCGggggUGUCUuuGGgguuuacguuaUUGGAGCu -3'
miRNA:   3'- -UCCG-CGCCGU----GUAGAggCC-----------AACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 39813 0.69 0.638185
Target:  5'- -uGCGCGGCACGcaUCCGccuagaUGGAGCc -3'
miRNA:   3'- ucCGCGCCGUGUagAGGCca----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 122403 0.69 0.638185
Target:  5'- uGGGgGCGGCGagggcuUCUCCGGaacgcGGGGUc -3'
miRNA:   3'- -UCCgCGCCGUgu----AGAGGCCaa---CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 19967 0.7 0.609102
Target:  5'- aAGGCGCGGCGCgagucgacgcaacaAaccgaccgcgcucgcUCgcaUCCGGUUGGcGCg -3'
miRNA:   3'- -UCCGCGCCGUG--------------U---------------AG---AGGCCAACCuCG- -5'
24445 5' -58.4 NC_005264.1 + 56159 0.7 0.588118
Target:  5'- --uUGCuGCGCGUCUCCGGgucuaggGGGGCu -3'
miRNA:   3'- uccGCGcCGUGUAGAGGCCaa-----CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 16627 0.71 0.568258
Target:  5'- cGGCGaucgacacguCGaGUGCGUCUCUGGUgcGGAGCg -3'
miRNA:   3'- uCCGC----------GC-CGUGUAGAGGCCAa-CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 80345 0.68 0.698016
Target:  5'- -cGCGCGGguCGgg-UCGGUUGGAGg -3'
miRNA:   3'- ucCGCGCCguGUagaGGCCAACCUCg -5'
24445 5' -58.4 NC_005264.1 + 47210 0.68 0.70785
Target:  5'- gGGGCcaCGGC-CGUCgauggCUGGUcGGAGCu -3'
miRNA:   3'- -UCCGc-GCCGuGUAGa----GGCCAaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 71514 0.66 0.810057
Target:  5'- aAGGcCGCGGUGCGcCUCgacUUGGAGCu -3'
miRNA:   3'- -UCC-GCGCCGUGUaGAGgccAACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 66508 0.67 0.793436
Target:  5'- uGGCGCGGUACAgcgagCgugcccugacgacgaCCGcGUUGcGGGCg -3'
miRNA:   3'- uCCGCGCCGUGUa----Ga--------------GGC-CAAC-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 149422 0.67 0.792547
Target:  5'- cGGCgGCGGCG-GUCgcgcgCCGGUgcgGaGAGCu -3'
miRNA:   3'- uCCG-CGCCGUgUAGa----GGCCAa--C-CUCG- -5'
24445 5' -58.4 NC_005264.1 + 131466 0.67 0.792547
Target:  5'- gAGGCGCGGUGCGgUCUaaaggcCCGGcaGGcgucAGCg -3'
miRNA:   3'- -UCCGCGCCGUGU-AGA------GGCCaaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 149881 0.67 0.792547
Target:  5'- cGGCgGCGGCGCGccgC-CCGGUaGGcaacGGCg -3'
miRNA:   3'- uCCG-CGCCGUGUa--GaGGCCAaCC----UCG- -5'
24445 5' -58.4 NC_005264.1 + 60857 0.67 0.78808
Target:  5'- cGGCGCGuGCGCggcaaaguuuucuaGUCUCuCGGcguacgccgcggUGGGGCc -3'
miRNA:   3'- uCCGCGC-CGUG--------------UAGAG-GCCa-----------ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 84475 0.67 0.77448
Target:  5'- cGGGUGCGGCuGCuacgCUCUGGgccuuacuaUGGAGa -3'
miRNA:   3'- -UCCGCGCCG-UGua--GAGGCCa--------ACCUCg -5'
24445 5' -58.4 NC_005264.1 + 155367 0.67 0.765259
Target:  5'- aAGGagGCcGCACGacguUCUCCGGacgcGGAGCg -3'
miRNA:   3'- -UCCg-CGcCGUGU----AGAGGCCaa--CCUCG- -5'
24445 5' -58.4 NC_005264.1 + 161981 0.68 0.73695
Target:  5'- cGGGCGCGGCAacgCcUCGGagGGGGa -3'
miRNA:   3'- -UCCGCGCCGUguaGaGGCCaaCCUCg -5'
24445 5' -58.4 NC_005264.1 + 127411 0.68 0.727326
Target:  5'- cGGaCGCGGCGCGUUgaagCUGcc-GGAGCu -3'
miRNA:   3'- uCC-GCGCCGUGUAGa---GGCcaaCCUCG- -5'
24445 5' -58.4 NC_005264.1 + 35529 0.68 0.727326
Target:  5'- uGGGCGCGGCGaaacCUauaGGgcguagUGGGGCa -3'
miRNA:   3'- -UCCGCGCCGUgua-GAgg-CCa-----ACCUCG- -5'
24445 5' -58.4 NC_005264.1 + 116600 0.68 0.70785
Target:  5'- cAGGCGCGGUcu-UCUCCGGUc---GCa -3'
miRNA:   3'- -UCCGCGCCGuguAGAGGCCAaccuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.