miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24446 5' -60.7 NC_005264.1 + 58246 0.66 0.762859
Target:  5'- cCGCUGC--UCACUcggcccgaUCCCGuGGGCggcauggCGCu -3'
miRNA:   3'- -GCGACGcuGGUGA--------AGGGC-CCCGa------GCG- -5'
24446 5' -60.7 NC_005264.1 + 111486 0.66 0.762859
Target:  5'- aCGCUGCG-CC-CUUCCuguCGGcGGCgacaccCGCc -3'
miRNA:   3'- -GCGACGCuGGuGAAGG---GCC-CCGa-----GCG- -5'
24446 5' -60.7 NC_005264.1 + 55252 0.66 0.762859
Target:  5'- uGCaacaUGCGACCGCcacgaagagCUGGGGCgCGCu -3'
miRNA:   3'- gCG----ACGCUGGUGaag------GGCCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 103801 0.66 0.753703
Target:  5'- aGCUacaaGCGGCgGga-CCgCGGGGCUUGCg -3'
miRNA:   3'- gCGA----CGCUGgUgaaGG-GCCCCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 33269 0.66 0.753703
Target:  5'- aCGC-GCGAuCCGCgccCCUGaGGGCggCGCc -3'
miRNA:   3'- -GCGaCGCU-GGUGaa-GGGC-CCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 152296 0.66 0.753703
Target:  5'- aCGC-GCGAuCCGCgccCCUGaGGGCggCGCc -3'
miRNA:   3'- -GCGaCGCU-GGUGaa-GGGC-CCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 37085 0.66 0.753703
Target:  5'- aGCgacGCGGCgGCagUUCCGGGGacggCGCc -3'
miRNA:   3'- gCGa--CGCUGgUGa-AGGGCCCCga--GCG- -5'
24446 5' -60.7 NC_005264.1 + 65569 0.66 0.751859
Target:  5'- gGCaGCGGCCACUaccgugccaaggCCCGGcGGCcacaucUUGCu -3'
miRNA:   3'- gCGaCGCUGGUGAa-----------GGGCC-CCG------AGCG- -5'
24446 5' -60.7 NC_005264.1 + 93775 0.66 0.744448
Target:  5'- uGC-GCGACgACgaugaccugCCCGGcGGC-CGCg -3'
miRNA:   3'- gCGaCGCUGgUGaa-------GGGCC-CCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 93082 0.66 0.735102
Target:  5'- cCGCgGCGACCucgGCUUCUCa--GCUCGCc -3'
miRNA:   3'- -GCGaCGCUGG---UGAAGGGcccCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 124314 0.66 0.735102
Target:  5'- gGCgggGCGGCgGCUgaCCCguGGGGCggGCg -3'
miRNA:   3'- gCGa--CGCUGgUGAa-GGG--CCCCGagCG- -5'
24446 5' -60.7 NC_005264.1 + 140968 0.66 0.735102
Target:  5'- aGCU-CGGCCuuUUCCuCGGGGCUg-- -3'
miRNA:   3'- gCGAcGCUGGugAAGG-GCCCCGAgcg -5'
24446 5' -60.7 NC_005264.1 + 5287 0.66 0.735102
Target:  5'- gGCgggGCGGCgGCUgaCCCguGGGGCggGCg -3'
miRNA:   3'- gCGa--CGCUGgUGAa-GGG--CCCCGagCG- -5'
24446 5' -60.7 NC_005264.1 + 37592 0.66 0.729454
Target:  5'- uCGCgGCGGCCGCgg--CGGGGggucaaaggacgcguCUCGCa -3'
miRNA:   3'- -GCGaCGCUGGUGaaggGCCCC---------------GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 156619 0.66 0.729454
Target:  5'- uCGCgGCGGCCGCgg--CGGGGggucaaaggacgcguCUCGCa -3'
miRNA:   3'- -GCGaCGCUGGUGaaggGCCCC---------------GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 126665 0.66 0.725674
Target:  5'- cCGUagauUGCGAUCgucccgucgcGCUUCCCGa-GCUCGCa -3'
miRNA:   3'- -GCG----ACGCUGG----------UGAAGGGCccCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 99913 0.66 0.725674
Target:  5'- gGCuUGCGGCCGCgcaagCCCGcGcGGCUaaGCu -3'
miRNA:   3'- gCG-ACGCUGGUGaa---GGGC-C-CCGAg-CG- -5'
24446 5' -60.7 NC_005264.1 + 15285 0.66 0.723779
Target:  5'- aCGUcgGCGGCCACUUCgcgCCGcGGGaaagauuccguaUCGCu -3'
miRNA:   3'- -GCGa-CGCUGGUGAAG---GGC-CCCg-----------AGCG- -5'
24446 5' -60.7 NC_005264.1 + 84928 0.66 0.716172
Target:  5'- gGCUGCGcGCuCugUUguaguguggCgCCGGGuGCUCGCu -3'
miRNA:   3'- gCGACGC-UG-GugAA---------G-GGCCC-CGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 102861 0.66 0.716172
Target:  5'- uCGCUcGCGGCCACcgCCgCGuGGCUgaGCg -3'
miRNA:   3'- -GCGA-CGCUGGUGaaGG-GCcCCGAg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.