miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24446 5' -60.7 NC_005264.1 + 78694 1.11 0.000865
Target:  5'- gCGCUGCGACCACUUCCCGGGGCUCGCg -3'
miRNA:   3'- -GCGACGCUGGUGAAGGGCCCCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 121892 0.81 0.116296
Target:  5'- cCGCUGCGGCUGCgaucgaCCGGGGCgcggCGCg -3'
miRNA:   3'- -GCGACGCUGGUGaag---GGCCCCGa---GCG- -5'
24446 5' -60.7 NC_005264.1 + 2866 0.81 0.116296
Target:  5'- cCGCUGCGGCUGCgaucgaCCGGGGCgcggCGCg -3'
miRNA:   3'- -GCGACGCUGGUGaag---GGCCCCGa---GCG- -5'
24446 5' -60.7 NC_005264.1 + 68501 0.76 0.22437
Target:  5'- aCGCgGCGACgGCUUUCUGGGGUaccUUGCg -3'
miRNA:   3'- -GCGaCGCUGgUGAAGGGCCCCG---AGCG- -5'
24446 5' -60.7 NC_005264.1 + 31624 0.73 0.3471
Target:  5'- uCGCccUGCGACCAUgcCUCGGGGCUaggaggaauaugugaCGCg -3'
miRNA:   3'- -GCG--ACGCUGGUGaaGGGCCCCGA---------------GCG- -5'
24446 5' -60.7 NC_005264.1 + 150651 0.73 0.3471
Target:  5'- uCGCccUGCGACCAUgcCUCGGGGCUaggaggaauaugugaCGCg -3'
miRNA:   3'- -GCG--ACGCUGGUGaaGGGCCCCGA---------------GCG- -5'
24446 5' -60.7 NC_005264.1 + 59761 0.73 0.351576
Target:  5'- gGCUGCGACgcggaCGCUUCgCGGGaCUCGUc -3'
miRNA:   3'- gCGACGCUG-----GUGAAGgGCCCcGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 77497 0.72 0.390448
Target:  5'- uCGCUGCGAgCGa-UCauGGGGUUCGCg -3'
miRNA:   3'- -GCGACGCUgGUgaAGggCCCCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 1517 0.71 0.440642
Target:  5'- gGCUGCG-CCGUUUUuuGGGGCccCGCg -3'
miRNA:   3'- gCGACGCuGGUGAAGggCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 120544 0.71 0.440642
Target:  5'- gGCUGCG-CCGUUUUuuGGGGCccCGCg -3'
miRNA:   3'- gCGACGCuGGUGAAGggCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 125452 0.71 0.44936
Target:  5'- uGUUGCGgucccucuGCCGCgcccugCUCGGaGGCUCGCu -3'
miRNA:   3'- gCGACGC--------UGGUGaa----GGGCC-CCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 30547 0.7 0.485145
Target:  5'- cCGCggugucGCGAUCACUUCUaccggCGGGG-UCGCa -3'
miRNA:   3'- -GCGa-----CGCUGGUGAAGG-----GCCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 154617 0.7 0.500762
Target:  5'- uGCUGCGgcuucggccgaugGCCGCgucuccgugucCCCGGGGUUCuGCu -3'
miRNA:   3'- gCGACGC-------------UGGUGaa---------GGGCCCCGAG-CG- -5'
24446 5' -60.7 NC_005264.1 + 35590 0.7 0.500762
Target:  5'- uGCUGCGgcuucggccgaugGCCGCgucuccgugucCCCGGGGUUCuGCu -3'
miRNA:   3'- gCGACGC-------------UGGUGaa---------GGGCCCCGAG-CG- -5'
24446 5' -60.7 NC_005264.1 + 80180 0.7 0.512853
Target:  5'- gCGCgaagGCGGaaugCACUUUCUGGGGCcaCGCa -3'
miRNA:   3'- -GCGa---CGCUg---GUGAAGGGCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 132326 0.7 0.512853
Target:  5'- -aCUGCGcgagaGCCGCUUCCCGcaauGGcCUCGCu -3'
miRNA:   3'- gcGACGC-----UGGUGAAGGGCc---CC-GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 112269 0.7 0.522234
Target:  5'- gCGCcGCGugCGCUUCCCGcacGCgCGCg -3'
miRNA:   3'- -GCGaCGCugGUGAAGGGCcc-CGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 71810 0.7 0.531681
Target:  5'- cCGCauaGCGGCCGaagccgCCCGcGGGgUCGCg -3'
miRNA:   3'- -GCGa--CGCUGGUgaa---GGGC-CCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 40787 0.7 0.531681
Target:  5'- cCGCgGCGccgagagcggaGCCGCUUgCCGcGGGgUCGCc -3'
miRNA:   3'- -GCGaCGC-----------UGGUGAAgGGC-CCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 146383 0.69 0.560368
Target:  5'- gCGCUGguuCGACCACguucacaCCCGcGGGCagGCc -3'
miRNA:   3'- -GCGAC---GCUGGUGaa-----GGGC-CCCGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.