miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24446 5' -60.7 NC_005264.1 + 152977 0.67 0.706604
Target:  5'- gCGCcGgGACCGCg-CCCgauaGGGGC-CGCu -3'
miRNA:   3'- -GCGaCgCUGGUGaaGGG----CCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 33950 0.67 0.706604
Target:  5'- gCGCcGgGACCGCg-CCCgauaGGGGC-CGCu -3'
miRNA:   3'- -GCGaCgCUGGUGaaGGG----CCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 104824 0.67 0.706604
Target:  5'- cCGCacGaCGGCCugUcCgCCGGGGC-CGCu -3'
miRNA:   3'- -GCGa-C-GCUGGugAaG-GGCCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 65513 0.67 0.700835
Target:  5'- aGUgaucgGCGACCuGCUUggcaCCGGGGCgcccucuaguugccaUCGCa -3'
miRNA:   3'- gCGa----CGCUGG-UGAAg---GGCCCCG---------------AGCG- -5'
24446 5' -60.7 NC_005264.1 + 158091 0.67 0.696978
Target:  5'- gCGCgGCGGuCCACc-CCCGGacgccGGCUCGg -3'
miRNA:   3'- -GCGaCGCU-GGUGaaGGGCC-----CCGAGCg -5'
24446 5' -60.7 NC_005264.1 + 39064 0.67 0.696978
Target:  5'- gCGCgGCGGuCCACc-CCCGGacgccGGCUCGg -3'
miRNA:   3'- -GCGaCGCU-GGUGaaGGGCC-----CCGAGCg -5'
24446 5' -60.7 NC_005264.1 + 30425 0.67 0.696978
Target:  5'- aGCUGCGGCgGaggaggUCUCGGGGgagcCGCg -3'
miRNA:   3'- gCGACGCUGgUga----AGGGCCCCga--GCG- -5'
24446 5' -60.7 NC_005264.1 + 140258 0.67 0.696978
Target:  5'- gGCgacgGUGacGCCGCUUCCagGGGGCaaCGCc -3'
miRNA:   3'- gCGa---CGC--UGGUGAAGGg-CCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 53166 0.67 0.696978
Target:  5'- uGCUcgucuuggGCGAguuCCACgucgagUCuCCGGGGC-CGCg -3'
miRNA:   3'- gCGA--------CGCU---GGUGa-----AG-GGCCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 52908 0.67 0.696978
Target:  5'- gGUcgGCGaaccGCCACUUCgaGGGGCaUUGCa -3'
miRNA:   3'- gCGa-CGC----UGGUGAAGggCCCCG-AGCG- -5'
24446 5' -60.7 NC_005264.1 + 139234 0.67 0.696978
Target:  5'- gCGCgGCaggaauGACgACUUCCCGGcccaGGUUCGUc -3'
miRNA:   3'- -GCGaCG------CUGgUGAAGGGCC----CCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 149452 0.67 0.696978
Target:  5'- aGCUGCGGCgGaggaggUCUCGGGGgagcCGCg -3'
miRNA:   3'- gCGACGCUGgUga----AGGGCCCCga--GCG- -5'
24446 5' -60.7 NC_005264.1 + 111011 0.67 0.687302
Target:  5'- gCGgaGCGcCCACcccucUCCUGGuucgaagcgguGGCUCGCg -3'
miRNA:   3'- -GCgaCGCuGGUGa----AGGGCC-----------CCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 88184 0.67 0.667832
Target:  5'- aGCUcaagaGCGGCCugcaCCCuGGGUUCGCg -3'
miRNA:   3'- gCGA-----CGCUGGugaaGGGcCCCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 121549 0.67 0.667832
Target:  5'- gCGCggGgGGCgACUUCCCgagacGGGGgUUGCu -3'
miRNA:   3'- -GCGa-CgCUGgUGAAGGG-----CCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 2522 0.67 0.667832
Target:  5'- gCGCggGgGGCgACUUCCCgagacGGGGgUUGCu -3'
miRNA:   3'- -GCGa-CgCUGgUGAAGGG-----CCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 157582 0.67 0.658053
Target:  5'- gGCcGCGACuCGCcUCCCGGcGCUCu- -3'
miRNA:   3'- gCGaCGCUG-GUGaAGGGCCcCGAGcg -5'
24446 5' -60.7 NC_005264.1 + 66606 0.67 0.658053
Target:  5'- gGCUGCG-CCGCgUUgCCGGcGCcgUCGCg -3'
miRNA:   3'- gCGACGCuGGUG-AAgGGCCcCG--AGCG- -5'
24446 5' -60.7 NC_005264.1 + 159020 0.67 0.658053
Target:  5'- -cCUGCGGCC-CcgCCCGGGcccgaaCUCGCg -3'
miRNA:   3'- gcGACGCUGGuGaaGGGCCCc-----GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 118160 0.67 0.658053
Target:  5'- uGCcGUGGCCGCccaugUCUGGcGGCUCGUc -3'
miRNA:   3'- gCGaCGCUGGUGaa---GGGCC-CCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.