miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24446 5' -60.7 NC_005264.1 + 1517 0.71 0.440642
Target:  5'- gGCUGCG-CCGUUUUuuGGGGCccCGCg -3'
miRNA:   3'- gCGACGCuGGUGAAGggCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 2522 0.67 0.667832
Target:  5'- gCGCggGgGGCgACUUCCCgagacGGGGgUUGCu -3'
miRNA:   3'- -GCGa-CgCUGgUGAAGGG-----CCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 2866 0.81 0.116296
Target:  5'- cCGCUGCGGCUGCgaucgaCCGGGGCgcggCGCg -3'
miRNA:   3'- -GCGACGCUGGUGaag---GGCCCCGa---GCG- -5'
24446 5' -60.7 NC_005264.1 + 3427 0.68 0.638445
Target:  5'- gGCgGCGcgccCCACUUCUCaGGGGUcCGCc -3'
miRNA:   3'- gCGaCGCu---GGUGAAGGG-CCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 5287 0.66 0.735102
Target:  5'- gGCgggGCGGCgGCUgaCCCguGGGGCggGCg -3'
miRNA:   3'- gCGa--CGCUGgUGAa-GGG--CCCCGagCG- -5'
24446 5' -60.7 NC_005264.1 + 5339 0.68 0.638445
Target:  5'- aCGaaGCGGUCGCUcgUCCCGGGcggcCUCGCg -3'
miRNA:   3'- -GCgaCGCUGGUGA--AGGGCCCc---GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 6134 0.67 0.658053
Target:  5'- uCGCgaaGC-ACCGCccgUCCUGGGuCUCGCg -3'
miRNA:   3'- -GCGa--CGcUGGUGa--AGGGCCCcGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 15285 0.66 0.723779
Target:  5'- aCGUcgGCGGCCACUUCgcgCCGcGGGaaagauuccguaUCGCu -3'
miRNA:   3'- -GCGa-CGCUGGUGAAG---GGC-CCCg-----------AGCG- -5'
24446 5' -60.7 NC_005264.1 + 20509 0.68 0.638445
Target:  5'- uCGCUGCG-CCGagaagCCaGGGGCaCGCg -3'
miRNA:   3'- -GCGACGCuGGUgaa--GGgCCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 30425 0.67 0.696978
Target:  5'- aGCUGCGGCgGaggaggUCUCGGGGgagcCGCg -3'
miRNA:   3'- gCGACGCUGgUga----AGGGCCCCga--GCG- -5'
24446 5' -60.7 NC_005264.1 + 30547 0.7 0.485145
Target:  5'- cCGCggugucGCGAUCACUUCUaccggCGGGG-UCGCa -3'
miRNA:   3'- -GCGa-----CGCUGGUGAAGG-----GCCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 31624 0.73 0.3471
Target:  5'- uCGCccUGCGACCAUgcCUCGGGGCUaggaggaauaugugaCGCg -3'
miRNA:   3'- -GCG--ACGCUGGUGaaGGGCCCCGA---------------GCG- -5'
24446 5' -60.7 NC_005264.1 + 33068 0.69 0.570029
Target:  5'- -uCUGCGACguCGCggugCCCGGGGCggauuUCGUg -3'
miRNA:   3'- gcGACGCUG--GUGaa--GGGCCCCG-----AGCG- -5'
24446 5' -60.7 NC_005264.1 + 33269 0.66 0.753703
Target:  5'- aCGC-GCGAuCCGCgccCCUGaGGGCggCGCc -3'
miRNA:   3'- -GCGaCGCU-GGUGaa-GGGC-CCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 33950 0.67 0.706604
Target:  5'- gCGCcGgGACCGCg-CCCgauaGGGGC-CGCu -3'
miRNA:   3'- -GCGaCgCUGGUGaaGGG----CCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 35590 0.7 0.500762
Target:  5'- uGCUGCGgcuucggccgaugGCCGCgucuccgugucCCCGGGGUUCuGCu -3'
miRNA:   3'- gCGACGC-------------UGGUGaa---------GGGCCCCGAG-CG- -5'
24446 5' -60.7 NC_005264.1 + 37085 0.66 0.753703
Target:  5'- aGCgacGCGGCgGCagUUCCGGGGacggCGCc -3'
miRNA:   3'- gCGa--CGCUGgUGa-AGGGCCCCga--GCG- -5'
24446 5' -60.7 NC_005264.1 + 37592 0.66 0.729454
Target:  5'- uCGCgGCGGCCGCgg--CGGGGggucaaaggacgcguCUCGCa -3'
miRNA:   3'- -GCGaCGCUGGUGaaggGCCCC---------------GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 38555 0.67 0.658053
Target:  5'- gGCcGCGACuCGCcUCCCGGcGCUCu- -3'
miRNA:   3'- gCGaCGCUG-GUGaAGGGCCcCGAGcg -5'
24446 5' -60.7 NC_005264.1 + 39064 0.67 0.696978
Target:  5'- gCGCgGCGGuCCACc-CCCGGacgccGGCUCGg -3'
miRNA:   3'- -GCGaCGCU-GGUGaaGGGCC-----CCGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.