miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24446 5' -60.7 NC_005264.1 + 157582 0.67 0.658053
Target:  5'- gGCcGCGACuCGCcUCCCGGcGCUCu- -3'
miRNA:   3'- gCGaCGCUG-GUGaAGGGCCcCGAGcg -5'
24446 5' -60.7 NC_005264.1 + 3427 0.68 0.638445
Target:  5'- gGCgGCGcgccCCACUUCUCaGGGGUcCGCc -3'
miRNA:   3'- gCGaCGCu---GGUGAAGGG-CCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 62224 0.68 0.638445
Target:  5'- gCGCUccGCGGCCGCU--UCGGGGUcgUCGg -3'
miRNA:   3'- -GCGA--CGCUGGUGAagGGCCCCG--AGCg -5'
24446 5' -60.7 NC_005264.1 + 20509 0.68 0.638445
Target:  5'- uCGCUGCG-CCGagaagCCaGGGGCaCGCg -3'
miRNA:   3'- -GCGACGCuGGUgaa--GGgCCCCGaGCG- -5'
24446 5' -60.7 NC_005264.1 + 124366 0.68 0.638445
Target:  5'- aCGaaGCGGUCGCUcgUCCCGGGcggcCUCGCg -3'
miRNA:   3'- -GCgaCGCUGGUGA--AGGGCCCc---GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 6134 0.67 0.658053
Target:  5'- uCGCgaaGC-ACCGCccgUCCUGGGuCUCGCg -3'
miRNA:   3'- -GCGa--CGcUGGUGa--AGGGCCCcGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 118160 0.67 0.658053
Target:  5'- uGCcGUGGCCGCccaugUCUGGcGGCUCGUc -3'
miRNA:   3'- gCGaCGCUGGUGaa---GGGCC-CCGAGCG- -5'
24446 5' -60.7 NC_005264.1 + 159020 0.67 0.658053
Target:  5'- -cCUGCGGCC-CcgCCCGGGcccgaaCUCGCg -3'
miRNA:   3'- gcGACGCUGGuGaaGGGCCCc-----GAGCG- -5'
24446 5' -60.7 NC_005264.1 + 66606 0.67 0.658053
Target:  5'- gGCUGCG-CCGCgUUgCCGGcGCcgUCGCg -3'
miRNA:   3'- gCGACGCuGGUG-AAgGGCCcCG--AGCG- -5'
24446 5' -60.7 NC_005264.1 + 96090 0.68 0.628631
Target:  5'- cCGUUGCGGCUACUguugCCgCGGuuuaGGCgccggCGCu -3'
miRNA:   3'- -GCGACGCUGGUGAa---GG-GCC----CCGa----GCG- -5'
24446 5' -60.7 NC_005264.1 + 158494 0.68 0.609017
Target:  5'- uGCUGCGACgCGCgcucagCCgccaGGGGCagGCc -3'
miRNA:   3'- gCGACGCUG-GUGaa----GGg---CCCCGagCG- -5'
24446 5' -60.7 NC_005264.1 + 33068 0.69 0.570029
Target:  5'- -uCUGCGACguCGCggugCCCGGGGCggauuUCGUg -3'
miRNA:   3'- gcGACGCUG--GUGaa--GGGCCCCG-----AGCG- -5'
24446 5' -60.7 NC_005264.1 + 68501 0.76 0.22437
Target:  5'- aCGCgGCGACgGCUUUCUGGGGUaccUUGCg -3'
miRNA:   3'- -GCGaCGCUGgUGAAGGGCCCCG---AGCG- -5'
24446 5' -60.7 NC_005264.1 + 150651 0.73 0.3471
Target:  5'- uCGCccUGCGACCAUgcCUCGGGGCUaggaggaauaugugaCGCg -3'
miRNA:   3'- -GCG--ACGCUGGUGaaGGGCCCCGA---------------GCG- -5'
24446 5' -60.7 NC_005264.1 + 120544 0.71 0.440642
Target:  5'- gGCUGCG-CCGUUUUuuGGGGCccCGCg -3'
miRNA:   3'- gCGACGCuGGUGAAGggCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 30547 0.7 0.485145
Target:  5'- cCGCggugucGCGAUCACUUCUaccggCGGGG-UCGCa -3'
miRNA:   3'- -GCGa-----CGCUGGUGAAGG-----GCCCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 154617 0.7 0.500762
Target:  5'- uGCUGCGgcuucggccgaugGCCGCgucuccgugucCCCGGGGUUCuGCu -3'
miRNA:   3'- gCGACGC-------------UGGUGaa---------GGGCCCCGAG-CG- -5'
24446 5' -60.7 NC_005264.1 + 80180 0.7 0.512853
Target:  5'- gCGCgaagGCGGaaugCACUUUCUGGGGCcaCGCa -3'
miRNA:   3'- -GCGa---CGCUg---GUGAAGGGCCCCGa-GCG- -5'
24446 5' -60.7 NC_005264.1 + 40787 0.7 0.531681
Target:  5'- cCGCgGCGccgagagcggaGCCGCUUgCCGcGGGgUCGCc -3'
miRNA:   3'- -GCGaCGC-----------UGGUGAAgGGC-CCCgAGCG- -5'
24446 5' -60.7 NC_005264.1 + 71810 0.7 0.531681
Target:  5'- cCGCauaGCGGCCGaagccgCCCGcGGGgUCGCg -3'
miRNA:   3'- -GCGa--CGCUGGUgaa---GGGC-CCCgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.