miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24448 3' -56.7 NC_005264.1 + 12892 0.66 0.917433
Target:  5'- -gGACGGAccgucgagccgcccgGCCUCGCAGUC-CUccccCGAc -3'
miRNA:   3'- cgCUGCCU---------------UGGAGCGUCAGcGAc---GCU- -5'
24448 3' -56.7 NC_005264.1 + 131918 0.66 0.917433
Target:  5'- -gGACGGAccgucgagccgcccgGCCUCGCAGUC-CUccccCGAc -3'
miRNA:   3'- cgCUGCCU---------------UGGAGCGUCAGcGAc---GCU- -5'
24448 3' -56.7 NC_005264.1 + 154868 0.66 0.915163
Target:  5'- cGUGcACGGAcCUUCGUGGUgGCUGUc- -3'
miRNA:   3'- -CGC-UGCCUuGGAGCGUCAgCGACGcu -5'
24448 3' -56.7 NC_005264.1 + 35842 0.66 0.915163
Target:  5'- cGUGcACGGAcCUUCGUGGUgGCUGUc- -3'
miRNA:   3'- -CGC-UGCCUuGGAGCGUCAgCGACGcu -5'
24448 3' -56.7 NC_005264.1 + 131701 0.66 0.915163
Target:  5'- aGCGuaGCGuGGGCCUgCGCGG-CGUUGCu- -3'
miRNA:   3'- -CGC--UGC-CUUGGA-GCGUCaGCGACGcu -5'
24448 3' -56.7 NC_005264.1 + 157804 0.66 0.915163
Target:  5'- gGCGcccacgacGCGGAACCUCGUGGcCuccuCUGCGc -3'
miRNA:   3'- -CGC--------UGCCUUGGAGCGUCaGc---GACGCu -5'
24448 3' -56.7 NC_005264.1 + 92115 0.66 0.915163
Target:  5'- uGCGGCGGcACacagCGCAG-CGUucgGCGAc -3'
miRNA:   3'- -CGCUGCCuUGga--GCGUCaGCGa--CGCU- -5'
24448 3' -56.7 NC_005264.1 + 32792 0.66 0.903265
Target:  5'- aGCGACGGucugGCCgcaaccaucaUCGCGGaaGcCUGCGGc -3'
miRNA:   3'- -CGCUGCCu---UGG----------AGCGUCagC-GACGCU- -5'
24448 3' -56.7 NC_005264.1 + 45911 0.66 0.896977
Target:  5'- uCGACGGAGCCgaGCAGcuaguuUCGaUGCGGu -3'
miRNA:   3'- cGCUGCCUUGGagCGUC------AGCgACGCU- -5'
24448 3' -56.7 NC_005264.1 + 123488 0.66 0.896977
Target:  5'- --uGCGGuGGCCgCGCGGUUGCUggGCGAu -3'
miRNA:   3'- cgcUGCC-UUGGaGCGUCAGCGA--CGCU- -5'
24448 3' -56.7 NC_005264.1 + 9923 0.66 0.896977
Target:  5'- cGCGACuGcGGGCUUUGCGGcgCGCUGaGAg -3'
miRNA:   3'- -CGCUG-C-CUUGGAGCGUCa-GCGACgCU- -5'
24448 3' -56.7 NC_005264.1 + 37392 0.66 0.896336
Target:  5'- cGCGGCagaGGGACCgcaacaaUCGCucGUCGCUGgGc -3'
miRNA:   3'- -CGCUG---CCUUGG-------AGCGu-CAGCGACgCu -5'
24448 3' -56.7 NC_005264.1 + 125817 0.66 0.890466
Target:  5'- cGC-ACGGAGCCUggaCGUAcuguuGUUGCUGUGGc -3'
miRNA:   3'- -CGcUGCCUUGGA---GCGU-----CAGCGACGCU- -5'
24448 3' -56.7 NC_005264.1 + 31800 0.66 0.890466
Target:  5'- gGCGGCGGucGCCgcCGCAgGUCGUgacGCGu -3'
miRNA:   3'- -CGCUGCCu-UGGa-GCGU-CAGCGa--CGCu -5'
24448 3' -56.7 NC_005264.1 + 75076 0.66 0.890466
Target:  5'- gGCcGCuGGuuCUUCGCGG-CGCUGCGGc -3'
miRNA:   3'- -CGcUG-CCuuGGAGCGUCaGCGACGCU- -5'
24448 3' -56.7 NC_005264.1 + 150826 0.66 0.890466
Target:  5'- gGCGGCGGucGCCgcCGCAgGUCGUgacGCGu -3'
miRNA:   3'- -CGCUGCCu-UGGa-GCGU-CAGCGa--CGCu -5'
24448 3' -56.7 NC_005264.1 + 122774 0.67 0.883736
Target:  5'- --aGCGGGGCCUCuugccgcCGGggCGCUGCGGg -3'
miRNA:   3'- cgcUGCCUUGGAGc------GUCa-GCGACGCU- -5'
24448 3' -56.7 NC_005264.1 + 42088 0.67 0.883736
Target:  5'- uGCGcCGGGAuaucccucguCgUCGCAGUCGCcgGCa- -3'
miRNA:   3'- -CGCuGCCUU----------GgAGCGUCAGCGa-CGcu -5'
24448 3' -56.7 NC_005264.1 + 99194 0.67 0.883736
Target:  5'- aCGugGGGuCCUCGCAGgccucCGCgGCc- -3'
miRNA:   3'- cGCugCCUuGGAGCGUCa----GCGaCGcu -5'
24448 3' -56.7 NC_005264.1 + 126832 0.67 0.883736
Target:  5'- uUGGCGGGcaacGCCUCGU---CGCUGCGc -3'
miRNA:   3'- cGCUGCCU----UGGAGCGucaGCGACGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.