miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24448 5' -50 NC_005264.1 + 17758 0.66 0.998642
Target:  5'- aGUUCGCGGCaaggaGAGCUGCcCgg-CCc -3'
miRNA:   3'- -CAAGCGCUGcug--CUUGACGuGauaGG- -5'
24448 5' -50 NC_005264.1 + 39007 0.66 0.998364
Target:  5'- ---aGCGACGACGGAUggaccaggGCGUUcgCCa -3'
miRNA:   3'- caagCGCUGCUGCUUGa-------CGUGAuaGG- -5'
24448 5' -50 NC_005264.1 + 158034 0.66 0.998364
Target:  5'- ---aGCGACGACGGAUggaccaggGCGUUcgCCa -3'
miRNA:   3'- caagCGCUGCUGCUUGa-------CGUGAuaGG- -5'
24448 5' -50 NC_005264.1 + 139107 0.66 0.998364
Target:  5'- --cCGCGACGugGGGCgaacacgGCAgcagaUUGUUCg -3'
miRNA:   3'- caaGCGCUGCugCUUGa------CGU-----GAUAGG- -5'
24448 5' -50 NC_005264.1 + 19107 0.66 0.998364
Target:  5'- --cCGCGGCGGCGcggaGACgaGCACUAc-- -3'
miRNA:   3'- caaGCGCUGCUGC----UUGa-CGUGAUagg -5'
24448 5' -50 NC_005264.1 + 33634 0.66 0.998334
Target:  5'- aUUgGCGGCGACGGuuggucgACgGUGCUAgCCg -3'
miRNA:   3'- cAAgCGCUGCUGCU-------UGaCGUGAUaGG- -5'
24448 5' -50 NC_005264.1 + 61104 0.66 0.998175
Target:  5'- --cUGCGugGGCGuggcaaguguucguGCUGaUGCUGUCCu -3'
miRNA:   3'- caaGCGCugCUGCu-------------UGAC-GUGAUAGG- -5'
24448 5' -50 NC_005264.1 + 15527 0.66 0.998039
Target:  5'- -cUUGCGGCGACGGucaaaugggAUUGCGgUcagcAUCCu -3'
miRNA:   3'- caAGCGCUGCUGCU---------UGACGUgA----UAGG- -5'
24448 5' -50 NC_005264.1 + 10536 0.66 0.998039
Target:  5'- -gUCGCG-CGACGAACUGaagaaACUu--- -3'
miRNA:   3'- caAGCGCuGCUGCUUGACg----UGAuagg -5'
24448 5' -50 NC_005264.1 + 57510 0.66 0.998039
Target:  5'- --gCGCGGCGGCGAgaGCU-CAUUGcCCc -3'
miRNA:   3'- caaGCGCUGCUGCU--UGAcGUGAUaGG- -5'
24448 5' -50 NC_005264.1 + 159324 0.66 0.998039
Target:  5'- gGUUCGaCGA-GGCGGACgGCGaggAUCCc -3'
miRNA:   3'- -CAAGC-GCUgCUGCUUGaCGUga-UAGG- -5'
24448 5' -50 NC_005264.1 + 56943 0.66 0.998039
Target:  5'- --aCGgGGCGACGggUuucaUGUAgaAUCCg -3'
miRNA:   3'- caaGCgCUGCUGCuuG----ACGUgaUAGG- -5'
24448 5' -50 NC_005264.1 + 65411 0.66 0.998039
Target:  5'- --cCGCGGCGGCGcccGCaGCGCUcacugCCg -3'
miRNA:   3'- caaGCGCUGCUGCu--UGaCGUGAua---GG- -5'
24448 5' -50 NC_005264.1 + 106945 0.66 0.998039
Target:  5'- --cUGCGGCGGCcgcaGGAUcugaggccuguUGCGCUGUCUg -3'
miRNA:   3'- caaGCGCUGCUG----CUUG-----------ACGUGAUAGG- -5'
24448 5' -50 NC_005264.1 + 130767 0.66 0.998039
Target:  5'- -aUCGCGcuaGugGccacGCUGCccgACUAUCCa -3'
miRNA:   3'- caAGCGCug-CugCu---UGACG---UGAUAGG- -5'
24448 5' -50 NC_005264.1 + 137292 0.66 0.998039
Target:  5'- cGUUgGCGGCGACGcgGGCguacgGCACccAUCg -3'
miRNA:   3'- -CAAgCGCUGCUGC--UUGa----CGUGa-UAGg -5'
24448 5' -50 NC_005264.1 + 40297 0.66 0.998039
Target:  5'- gGUUCGaCGA-GGCGGACgGCGaggAUCCc -3'
miRNA:   3'- -CAAGC-GCUgCUGCUUGaCGUga-UAGG- -5'
24448 5' -50 NC_005264.1 + 68642 0.66 0.998039
Target:  5'- gGUagGCGACGAgGcuCUGCAgUuUCCc -3'
miRNA:   3'- -CAagCGCUGCUgCuuGACGUgAuAGG- -5'
24448 5' -50 NC_005264.1 + 88882 0.66 0.99782
Target:  5'- cGUcCGCGGCagccaagaagcagaaGACGAACUuguagaagucGCACUcGUCCu -3'
miRNA:   3'- -CAaGCGCUG---------------CUGCUUGA----------CGUGA-UAGG- -5'
24448 5' -50 NC_005264.1 + 125462 0.66 0.997662
Target:  5'- -cUCGCGGCGGCGucGCUGgCGgaGaacUCCu -3'
miRNA:   3'- caAGCGCUGCUGCu-UGAC-GUgaU---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.