miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24449 3' -54.9 NC_005264.1 + 112996 0.66 0.948279
Target:  5'- aGAAgGCUGCGGCGUaCGUGCUcGcgCAc -3'
miRNA:   3'- gCUU-UGGCGCCGCGcGUACGA-CaaGU- -5'
24449 3' -54.9 NC_005264.1 + 123481 0.66 0.943875
Target:  5'- aCGGGcauGCgGUGGcCGCGCGguUGCUGggCGa -3'
miRNA:   3'- -GCUU---UGgCGCC-GCGCGU--ACGACaaGU- -5'
24449 3' -54.9 NC_005264.1 + 130440 0.66 0.943875
Target:  5'- -aGAGCCGauGCGCGCGUGgaGg--- -3'
miRNA:   3'- gcUUUGGCgcCGCGCGUACgaCaagu -5'
24449 3' -54.9 NC_005264.1 + 35505 0.66 0.939233
Target:  5'- gCGAcGCCGCGGCGCagGUGCccccgUCGc -3'
miRNA:   3'- -GCUuUGGCGCCGCGcgUACGaca--AGU- -5'
24449 3' -54.9 NC_005264.1 + 4609 0.66 0.939233
Target:  5'- ---cGCCGCGGCGgCGUagGCgcGUUCu -3'
miRNA:   3'- gcuuUGGCGCCGC-GCGuaCGa-CAAGu -5'
24449 3' -54.9 NC_005264.1 + 123636 0.66 0.939233
Target:  5'- ---cGCCGCGGCGgCGUagGCgcGUUCu -3'
miRNA:   3'- gcuuUGGCGCCGC-GCGuaCGa-CAAGu -5'
24449 3' -54.9 NC_005264.1 + 154532 0.66 0.939233
Target:  5'- gCGAcGCCGCGGCGCagGUGCccccgUCGc -3'
miRNA:   3'- -GCUuUGGCGCCGCGcgUACGaca--AGU- -5'
24449 3' -54.9 NC_005264.1 + 22714 0.66 0.934351
Target:  5'- aCGAG--UGCGGCGCGCAaGCgUGUg-- -3'
miRNA:   3'- -GCUUugGCGCCGCGCGUaCG-ACAagu -5'
24449 3' -54.9 NC_005264.1 + 131601 0.66 0.934351
Target:  5'- gGAGGgaGCGGCGCGCGUGg-GcgCGc -3'
miRNA:   3'- gCUUUggCGCCGCGCGUACgaCaaGU- -5'
24449 3' -54.9 NC_005264.1 + 154125 0.66 0.93385
Target:  5'- cCGAAACgGCGGCcacgcgcGCGCAgaGCgaGUUCu -3'
miRNA:   3'- -GCUUUGgCGCCG-------CGCGUa-CGa-CAAGu -5'
24449 3' -54.9 NC_005264.1 + 19435 0.66 0.929228
Target:  5'- uGugGCCGCGGgGCGCggGUggGUUUc -3'
miRNA:   3'- gCuuUGGCGCCgCGCGuaCGa-CAAGu -5'
24449 3' -54.9 NC_005264.1 + 129489 0.66 0.929228
Target:  5'- uCGAGAUUGCGGCGgCGCAgg--GUUUg -3'
miRNA:   3'- -GCUUUGGCGCCGC-GCGUacgaCAAGu -5'
24449 3' -54.9 NC_005264.1 + 32974 0.66 0.928703
Target:  5'- gGAGACaCGCGGgcuCGCGCAUaucgccaucgggcGCUGgUCGg -3'
miRNA:   3'- gCUUUG-GCGCC---GCGCGUA-------------CGACaAGU- -5'
24449 3' -54.9 NC_005264.1 + 100922 0.66 0.928703
Target:  5'- gCGcAAGCgGCGGCGCcCGUGCgccuaauacuucaUGUUCu -3'
miRNA:   3'- -GC-UUUGgCGCCGCGcGUACG-------------ACAAGu -5'
24449 3' -54.9 NC_005264.1 + 152001 0.66 0.928703
Target:  5'- gGAGACaCGCGGgcuCGCGCAUaucgccaucgggcGCUGgUCGg -3'
miRNA:   3'- gCUUUG-GCGCC---GCGCGUA-------------CGACaAGU- -5'
24449 3' -54.9 NC_005264.1 + 58808 0.67 0.923863
Target:  5'- cCGAuuuCCGCGGCGCGCGU-Ca----- -3'
miRNA:   3'- -GCUuu-GGCGCCGCGCGUAcGacaagu -5'
24449 3' -54.9 NC_005264.1 + 117840 0.67 0.923863
Target:  5'- gGGAGgCGCGGCggaguGCGCAUGCa----- -3'
miRNA:   3'- gCUUUgGCGCCG-----CGCGUACGacaagu -5'
24449 3' -54.9 NC_005264.1 + 5948 0.67 0.923863
Target:  5'- cCGAAcCCGCGGCGuUGCcUGUUGa--- -3'
miRNA:   3'- -GCUUuGGCGCCGC-GCGuACGACaagu -5'
24449 3' -54.9 NC_005264.1 + 93077 0.67 0.918257
Target:  5'- aGggGCCGCGGCGaCcUcgGCUucUCAg -3'
miRNA:   3'- gCuuUGGCGCCGC-GcGuaCGAcaAGU- -5'
24449 3' -54.9 NC_005264.1 + 20458 0.67 0.912409
Target:  5'- cCGGcgGACaGCGGCGCGCAUgGgaGggCAu -3'
miRNA:   3'- -GCU--UUGgCGCCGCGCGUA-CgaCaaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.