miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24449 5' -56.1 NC_005264.1 + 52521 0.66 0.920942
Target:  5'- -cUGGauuuCGUGCGcCGCGUGGCAGaguacUGCa -3'
miRNA:   3'- gaGCC----GCAUGUcGCGCACCGUCa----ACG- -5'
24449 5' -56.1 NC_005264.1 + 52947 0.66 0.920942
Target:  5'- aCUCGcCGaUGCAGCGCcucuacgcGGCGGUgcUGCg -3'
miRNA:   3'- -GAGCcGC-AUGUCGCGca------CCGUCA--ACG- -5'
24449 5' -56.1 NC_005264.1 + 125894 0.66 0.919827
Target:  5'- gUCGuGCGggcuuguuucuCGGCGCGUGuuGCuGUUGCc -3'
miRNA:   3'- gAGC-CGCau---------GUCGCGCAC--CGuCAACG- -5'
24449 5' -56.1 NC_005264.1 + 6868 0.66 0.919827
Target:  5'- gUCGuGCGggcuuguuucuCGGCGCGUGuuGCuGUUGCc -3'
miRNA:   3'- gAGC-CGCau---------GUCGCGCAC--CGuCAACG- -5'
24449 5' -56.1 NC_005264.1 + 153588 0.66 0.917568
Target:  5'- -cUGGCuagccugaugcuucaGUACGaaacGCGCGUGGUAGcgGCg -3'
miRNA:   3'- gaGCCG---------------CAUGU----CGCGCACCGUCaaCG- -5'
24449 5' -56.1 NC_005264.1 + 92483 0.66 0.915271
Target:  5'- -aCGG-GUACAcuGCG-GUGGCGGU-GCg -3'
miRNA:   3'- gaGCCgCAUGU--CGCgCACCGUCAaCG- -5'
24449 5' -56.1 NC_005264.1 + 162690 0.66 0.915271
Target:  5'- gUCGGCGcGCuGCGCGccGGCGuuaagGCg -3'
miRNA:   3'- gAGCCGCaUGuCGCGCa-CCGUcaa--CG- -5'
24449 5' -56.1 NC_005264.1 + 40106 0.66 0.915271
Target:  5'- cCUCGGCGUACAG-GuUGUaucGGCug-UGCu -3'
miRNA:   3'- -GAGCCGCAUGUCgC-GCA---CCGucaACG- -5'
24449 5' -56.1 NC_005264.1 + 132632 0.66 0.915271
Target:  5'- -cCGGCGaucGCGGUcgggacGCG-GGCAGggGCg -3'
miRNA:   3'- gaGCCGCa--UGUCG------CGCaCCGUCaaCG- -5'
24449 5' -56.1 NC_005264.1 + 25150 0.66 0.915271
Target:  5'- cCUCGcGCGcguuugcgGCAGgGgGUGGCGGg-GCa -3'
miRNA:   3'- -GAGC-CGCa-------UGUCgCgCACCGUCaaCG- -5'
24449 5' -56.1 NC_005264.1 + 43664 0.66 0.915271
Target:  5'- gUCGGCGcGCuGCGCGccGGCGuuaagGCg -3'
miRNA:   3'- gAGCCGCaUGuCGCGCa-CCGUcaa--CG- -5'
24449 5' -56.1 NC_005264.1 + 13605 0.66 0.915271
Target:  5'- -cCGGCGaucGCGGUcgggacGCG-GGCAGggGCg -3'
miRNA:   3'- gaGCCGCa--UGUCG------CGCaCCGUCaaCG- -5'
24449 5' -56.1 NC_005264.1 + 30392 0.66 0.909364
Target:  5'- uCUCGGCGgcgGCGGuCGCGcGcCGGU-GCg -3'
miRNA:   3'- -GAGCCGCa--UGUC-GCGCaCcGUCAaCG- -5'
24449 5' -56.1 NC_005264.1 + 20458 0.66 0.909364
Target:  5'- -cCGGCGgacaGCGGCGCGcaUGGgAGg-GCa -3'
miRNA:   3'- gaGCCGCa---UGUCGCGC--ACCgUCaaCG- -5'
24449 5' -56.1 NC_005264.1 + 87521 0.66 0.909364
Target:  5'- -cCGGC--ACuGGCGCGcGGCAGaUGCu -3'
miRNA:   3'- gaGCCGcaUG-UCGCGCaCCGUCaACG- -5'
24449 5' -56.1 NC_005264.1 + 149419 0.66 0.909364
Target:  5'- uCUCGGCGgcgGCGGuCGCGcGcCGGU-GCg -3'
miRNA:   3'- -GAGCCGCa--UGUC-GCGCaCcGUCAaCG- -5'
24449 5' -56.1 NC_005264.1 + 69164 0.66 0.908761
Target:  5'- -aCGGUa---AGCGCGgugaucaUGGCAGUUGUa -3'
miRNA:   3'- gaGCCGcaugUCGCGC-------ACCGUCAACG- -5'
24449 5' -56.1 NC_005264.1 + 137539 0.66 0.903224
Target:  5'- gUCGGCcu-CGGCGaCGUGGUAGg--- -3'
miRNA:   3'- gAGCCGcauGUCGC-GCACCGUCaacg -5'
24449 5' -56.1 NC_005264.1 + 89683 0.66 0.903224
Target:  5'- -cUGGCGguggGCaugAGCGCuaccagcUGGCAGUUGUa -3'
miRNA:   3'- gaGCCGCa---UG---UCGCGc------ACCGUCAACG- -5'
24449 5' -56.1 NC_005264.1 + 125563 0.66 0.903224
Target:  5'- aUCGGCG-GCAGgGgGcuucGGCAGgaGCg -3'
miRNA:   3'- gAGCCGCaUGUCgCgCa---CCGUCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.