miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24450 5' -51.7 NC_005264.1 + 30852 0.66 0.989984
Target:  5'- -cGUCGGcGGCGGCGCGccgcccGGUAGGc- -3'
miRNA:   3'- caCGGCCaUUGUCGCGCa-----UCAUCUuc -5'
24450 5' -51.7 NC_005264.1 + 149878 0.66 0.989984
Target:  5'- -cGUCGGcGGCGGCGCGccgcccGGUAGGc- -3'
miRNA:   3'- caCGGCCaUUGUCGCGCa-----UCAUCUuc -5'
24450 5' -51.7 NC_005264.1 + 111277 0.66 0.987051
Target:  5'- -cGUCGGcAACGGUGCGUAcgAGAAc -3'
miRNA:   3'- caCGGCCaUUGUCGCGCAUcaUCUUc -5'
24450 5' -51.7 NC_005264.1 + 54603 0.66 0.983498
Target:  5'- -cGCCGGccuCGGCGCGUGcgGGAc- -3'
miRNA:   3'- caCGGCCauuGUCGCGCAUcaUCUuc -5'
24450 5' -51.7 NC_005264.1 + 137538 0.66 0.983498
Target:  5'- -gGUCGGccuCGGCGaCGUGGUAGGu- -3'
miRNA:   3'- caCGGCCauuGUCGC-GCAUCAUCUuc -5'
24450 5' -51.7 NC_005264.1 + 136371 0.67 0.981467
Target:  5'- cUGCCGGcgcgAAUAGCGCu--GUGGAGc -3'
miRNA:   3'- cACGGCCa---UUGUCGCGcauCAUCUUc -5'
24450 5' -51.7 NC_005264.1 + 34129 0.67 0.976849
Target:  5'- cUGCCucuGGUGACgGGCGCGUAGg----- -3'
miRNA:   3'- cACGG---CCAUUG-UCGCGCAUCaucuuc -5'
24450 5' -51.7 NC_005264.1 + 68614 0.67 0.971438
Target:  5'- -gGCCGcguagcgcaucGUAGCAaCGCGUGGUAGgcGa -3'
miRNA:   3'- caCGGC-----------CAUUGUcGCGCAUCAUCuuC- -5'
24450 5' -51.7 NC_005264.1 + 20456 0.68 0.968415
Target:  5'- -aGCCGGcggacAGCGGCGCGcaugGGAGGg -3'
miRNA:   3'- caCGGCCa----UUGUCGCGCaucaUCUUC- -5'
24450 5' -51.7 NC_005264.1 + 72469 0.68 0.964835
Target:  5'- -cGCCGGUcggaucguguaccGGCAGCGuCGgcgGGUuGAAGa -3'
miRNA:   3'- caCGGCCA-------------UUGUCGC-GCa--UCAuCUUC- -5'
24450 5' -51.7 NC_005264.1 + 3471 0.68 0.957999
Target:  5'- gGUGCCGcauccacgauGUGGCA-CGCGUcGUGGAGGu -3'
miRNA:   3'- -CACGGC----------CAUUGUcGCGCAuCAUCUUC- -5'
24450 5' -51.7 NC_005264.1 + 2882 0.68 0.957999
Target:  5'- -cGaCCGGggcGCGGCGCGgcGgGGAGGg -3'
miRNA:   3'- caC-GGCCau-UGUCGCGCauCaUCUUC- -5'
24450 5' -51.7 NC_005264.1 + 121908 0.68 0.957999
Target:  5'- -cGaCCGGggcGCGGCGCGgcGgGGAGGg -3'
miRNA:   3'- caC-GGCCau-UGUCGCGCauCaUCUUC- -5'
24450 5' -51.7 NC_005264.1 + 21191 0.68 0.954058
Target:  5'- cGUGCUGGc--CGGC-CGUAGUAGAc- -3'
miRNA:   3'- -CACGGCCauuGUCGcGCAUCAUCUuc -5'
24450 5' -51.7 NC_005264.1 + 8381 0.69 0.935836
Target:  5'- -cGCCGGacGCGGCGCGUu---GAAGc -3'
miRNA:   3'- caCGGCCauUGUCGCGCAucauCUUC- -5'
24450 5' -51.7 NC_005264.1 + 92965 0.69 0.935836
Target:  5'- uUGCUGGgcGCgaAGCGCGUccgccGUAGggGc -3'
miRNA:   3'- cACGGCCauUG--UCGCGCAu----CAUCuuC- -5'
24450 5' -51.7 NC_005264.1 + 127408 0.69 0.935836
Target:  5'- -cGCCGGacGCGGCGCGUu---GAAGc -3'
miRNA:   3'- caCGGCCauUGUCGCGCAucauCUUC- -5'
24450 5' -51.7 NC_005264.1 + 24206 0.7 0.893548
Target:  5'- gGUGCCGGUGGCcgaagccAGCGCGccgGGaUAGuAAGa -3'
miRNA:   3'- -CACGGCCAUUG-------UCGCGCa--UC-AUC-UUC- -5'
24450 5' -51.7 NC_005264.1 + 155728 0.71 0.865053
Target:  5'- -gGCCGGcgcUAACGGCGCGU--UGGAAa -3'
miRNA:   3'- caCGGCC---AUUGUCGCGCAucAUCUUc -5'
24450 5' -51.7 NC_005264.1 + 36702 0.71 0.865053
Target:  5'- -gGCCGGcgcUAACGGCGCGU--UGGAAa -3'
miRNA:   3'- caCGGCC---AUUGUCGCGCAucAUCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.