Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24450 | 5' | -51.7 | NC_005264.1 | + | 2882 | 0.68 | 0.957999 |
Target: 5'- -cGaCCGGggcGCGGCGCGgcGgGGAGGg -3' miRNA: 3'- caC-GGCCau-UGUCGCGCauCaUCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 3471 | 0.68 | 0.957999 |
Target: 5'- gGUGCCGcauccacgauGUGGCA-CGCGUcGUGGAGGu -3' miRNA: 3'- -CACGGC----------CAUUGUcGCGCAuCAUCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 8381 | 0.69 | 0.935836 |
Target: 5'- -cGCCGGacGCGGCGCGUu---GAAGc -3' miRNA: 3'- caCGGCCauUGUCGCGCAucauCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 20456 | 0.68 | 0.968415 |
Target: 5'- -aGCCGGcggacAGCGGCGCGcaugGGAGGg -3' miRNA: 3'- caCGGCCa----UUGUCGCGCaucaUCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 21191 | 0.68 | 0.954058 |
Target: 5'- cGUGCUGGc--CGGC-CGUAGUAGAc- -3' miRNA: 3'- -CACGGCCauuGUCGcGCAUCAUCUuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 24206 | 0.7 | 0.893548 |
Target: 5'- gGUGCCGGUGGCcgaagccAGCGCGccgGGaUAGuAAGa -3' miRNA: 3'- -CACGGCCAUUG-------UCGCGCa--UC-AUC-UUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 30852 | 0.66 | 0.989984 |
Target: 5'- -cGUCGGcGGCGGCGCGccgcccGGUAGGc- -3' miRNA: 3'- caCGGCCaUUGUCGCGCa-----UCAUCUuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 34129 | 0.67 | 0.976849 |
Target: 5'- cUGCCucuGGUGACgGGCGCGUAGg----- -3' miRNA: 3'- cACGG---CCAUUG-UCGCGCAUCaucuuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 36702 | 0.71 | 0.865053 |
Target: 5'- -gGCCGGcgcUAACGGCGCGU--UGGAAa -3' miRNA: 3'- caCGGCC---AUUGUCGCGCAucAUCUUc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 54603 | 0.66 | 0.983498 |
Target: 5'- -cGCCGGccuCGGCGCGUGcgGGAc- -3' miRNA: 3'- caCGGCCauuGUCGCGCAUcaUCUuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 55828 | 0.73 | 0.787108 |
Target: 5'- -aGCCGGUGGCGGCGCGgcugacUGGGc- -3' miRNA: 3'- caCGGCCAUUGUCGCGCauc---AUCUuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 68614 | 0.67 | 0.971438 |
Target: 5'- -gGCCGcguagcgcaucGUAGCAaCGCGUGGUAGgcGa -3' miRNA: 3'- caCGGC-----------CAUUGUcGCGCAUCAUCuuC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 69856 | 0.8 | 0.432539 |
Target: 5'- -gGCCGGUGcuGCGGCGCGUGGUGa--- -3' miRNA: 3'- caCGGCCAU--UGUCGCGCAUCAUcuuc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 72469 | 0.68 | 0.964835 |
Target: 5'- -cGCCGGUcggaucguguaccGGCAGCGuCGgcgGGUuGAAGa -3' miRNA: 3'- caCGGCCA-------------UUGUCGC-GCa--UCAuCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 75336 | 1.1 | 0.006607 |
Target: 5'- aGUGCCGGUAACAGCGCGUAGUAGAAGa -3' miRNA: 3'- -CACGGCCAUUGUCGCGCAUCAUCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 79172 | 0.72 | 0.832314 |
Target: 5'- -gGCCGGaAACAauaauggaacuGCGCGUAG-AGAGGg -3' miRNA: 3'- caCGGCCaUUGU-----------CGCGCAUCaUCUUC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 81686 | 0.73 | 0.787108 |
Target: 5'- -gGCCguGGUGAuCAGCGCGUGccuGUGGggGu -3' miRNA: 3'- caCGG--CCAUU-GUCGCGCAU---CAUCuuC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 92965 | 0.69 | 0.935836 |
Target: 5'- uUGCUGGgcGCgaAGCGCGUccgccGUAGggGc -3' miRNA: 3'- cACGGCCauUG--UCGCGCAu----CAUCuuC- -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 111277 | 0.66 | 0.987051 |
Target: 5'- -cGUCGGcAACGGUGCGUAcgAGAAc -3' miRNA: 3'- caCGGCCaUUGUCGCGCAUcaUCUUc -5' |
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24450 | 5' | -51.7 | NC_005264.1 | + | 121908 | 0.68 | 0.957999 |
Target: 5'- -cGaCCGGggcGCGGCGCGgcGgGGAGGg -3' miRNA: 3'- caC-GGCCau-UGUCGCGCauCaUCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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