miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 78500 0.66 0.840563
Target:  5'- gCCGgugcACGCGgugaggccaguaaccAUCGCGCCGuGcCCGGUGCa -3'
miRNA:   3'- -GGCa---UGCGU---------------UGGCGCGGC-C-GGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 31844 0.66 0.840563
Target:  5'- -aGU-UGCGACCcccugaaaucuuccaGCGCCucgcGGUCGGCGCa -3'
miRNA:   3'- ggCAuGCGUUGG---------------CGCGG----CCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 119214 0.66 0.837447
Target:  5'- gCGUaacGCGCGACCaCGCgaGGuUUGGCGCg -3'
miRNA:   3'- gGCA---UGCGUUGGcGCGg-CC-GGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 20651 0.66 0.837447
Target:  5'- ---cACGgAACCGCGUCGGUgGAagauuucaauCGCg -3'
miRNA:   3'- ggcaUGCgUUGGCGCGGCCGgCU----------GCG- -5'
24451 3' -59.6 NC_005264.1 + 162581 0.66 0.837447
Target:  5'- -aGUGgGCuucuGCCGCGUCcagcGCCGcCGCa -3'
miRNA:   3'- ggCAUgCGu---UGGCGCGGc---CGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 106250 0.66 0.837447
Target:  5'- gCGagGCGC--UCGCGCCuGCUGACGg -3'
miRNA:   3'- gGCa-UGCGuuGGCGCGGcCGGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 3068 0.66 0.837447
Target:  5'- gCUGUcucgcCGCGACUgGCGgCGGCCGAgGa -3'
miRNA:   3'- -GGCAu----GCGUUGG-CGCgGCCGGCUgCg -5'
24451 3' -59.6 NC_005264.1 + 113038 0.66 0.837447
Target:  5'- gCGgcCGCGACUGgGCCGcGgCGAucuuaCGCg -3'
miRNA:   3'- gGCauGCGUUGGCgCGGC-CgGCU-----GCG- -5'
24451 3' -59.6 NC_005264.1 + 85067 0.66 0.837447
Target:  5'- gCGUcucUGCGGCCGCGUcgucagauuCGGauaCGGCGCc -3'
miRNA:   3'- gGCAu--GCGUUGGCGCG---------GCCg--GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 158082 0.66 0.837447
Target:  5'- gCCGaguucGCGCGGCgGUccacccccggacGCCGGCuCGGCGg -3'
miRNA:   3'- -GGCa----UGCGUUGgCG------------CGGCCG-GCUGCg -5'
24451 3' -59.6 NC_005264.1 + 133219 0.66 0.837447
Target:  5'- uUCGUcCGC-GCCGUagagcuuucgaaGCCaagcGCCGACGCg -3'
miRNA:   3'- -GGCAuGCGuUGGCG------------CGGc---CGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 91850 0.66 0.837447
Target:  5'- ---cACGCAGCCccuGCGaCCGGgCGACa- -3'
miRNA:   3'- ggcaUGCGUUGG---CGC-GGCCgGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 121857 0.66 0.837447
Target:  5'- -gGUugGCGGa-GgGCCGGUCG-CGCu -3'
miRNA:   3'- ggCAugCGUUggCgCGGCCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 106304 0.66 0.837447
Target:  5'- cCCGccgGCAccaucACCuGUGCC-GCCGGCGCg -3'
miRNA:   3'- -GGCaugCGU-----UGG-CGCGGcCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 39055 0.66 0.837447
Target:  5'- gCCGaguucGCGCGGCgGUccacccccggacGCCGGCuCGGCGg -3'
miRNA:   3'- -GGCa----UGCGUUGgCG------------CGGCCG-GCUGCg -5'
24451 3' -59.6 NC_005264.1 + 122095 0.66 0.837447
Target:  5'- gCUGUcucgcCGCGACUgGCGgCGGCCGAgGa -3'
miRNA:   3'- -GGCAu----GCGUUGG-CGCgGCCGGCUgCg -5'
24451 3' -59.6 NC_005264.1 + 78963 0.66 0.837447
Target:  5'- gUGUGCGCGAaguUCG-GCaCGGCCGA-GCc -3'
miRNA:   3'- gGCAUGCGUU---GGCgCG-GCCGGCUgCG- -5'
24451 3' -59.6 NC_005264.1 + 87714 0.66 0.837447
Target:  5'- uCUG-ACGCGcggccauuugACUGCGCCccagcucgGcGCCGGCGCc -3'
miRNA:   3'- -GGCaUGCGU----------UGGCGCGG--------C-CGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 88533 0.66 0.837447
Target:  5'- cUCGUugGCcauGCCGCGCgccaGaCCGcCGCu -3'
miRNA:   3'- -GGCAugCGu--UGGCGCGg---CcGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 2831 0.66 0.837447
Target:  5'- -gGUugGCGGa-GgGCCGGUCG-CGCu -3'
miRNA:   3'- ggCAugCGUUggCgCGGCCGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.